MmuINT0048925 @ mm10
Intron Retention
Gene
ENSMUSG00000040479 | Dgkz
Description
diacylglycerol kinase zeta [Source:MGI Symbol;Acc:MGI:1278339]
Coordinates
chr2:91934056-91934286:-
Coord C1 exon
chr2:91934166-91934286
Coord A exon
chr2:91934090-91934165
Coord C2 exon
chr2:91934056-91934089
Length
76 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
3' ss Seq
CCCTTTCCTTTTATCTGCAGCAC
3' ss Score
10.83
Exon sequences
Seq C1 exon
CTCCAGGAGCTACACCGAGCAGGAGGTGACCTCATGCACCGTGACCAGAAGAGCCGCACGCTCTTGCACCACGCGGTCAGCACTGGCAGTAAGGAAGTGGTCCGCTATCTGCTGGATCATG
Seq A exon
GTAAGCTGCGTTGCTGGGGCTGGGAGGGAGAAAGGGGGAGCCAGGCTCTTAGCATCCCCTTTCCTTTTATCTGCAG
Seq C2 exon
CACCTCCAGAGATCCTTGATGCTGTGGAGGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040479:ENSMUST00000099709:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.463 A=NA C2=0.583
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(42.1=100)
A:
NA
C2:
PF127962=Ank_2=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAGGAGCTACACCGAGC
R:
TCTCCTCCACAGCATCAAGGA
Band lengths:
154-230
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types