HsaINT1010981 @ hg38
Intron Retention
Gene
ENSG00000149091 | DGKZ
Description
diacylglycerol kinase zeta [Source:HGNC Symbol;Acc:HGNC:2857]
Coordinates
chr11:46378991-46379236:+
Coord C1 exon
chr11:46378991-46379111
Coord A exon
chr11:46379112-46379202
Coord C2 exon
chr11:46379203-46379236
Length
91 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
3' ss Seq
CACCACCTCCCCTTCTCCAGCCC
3' ss Score
6.98
Exon sequences
Seq C1 exon
CTCCAGGAGCTGCACCGAGCTGGGGGCGACCTCATGCACCGAGACGAGCAGAGTCGCACGCTCCTGCACCACGCAGTCAGCACTGGCAGCAAGGATGTGGTCCGCTACCTGCTGGACCACG
Seq A exon
GTGAGCCGGGCAGTGGAGCCCAGGGCCTGGGGCCAAGGTGGGAGGAGGAGGGGCTGCCAGGCCTCTCTGACCACCACCTCCCCTTCTCCAG
Seq C2 exon
CCCCCCCAGAGATCCTTGATGCGGTGGAGGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000149091:ENST00000343674:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.466 A=NA C2=0.667
Domain overlap (PFAM):
C1:
PF138571=Ank_5=PU(72.5=90.2)
A:
NA
C2:
PF138571=Ank_5=FE(21.6=100),PF127962=Ank_2=PU(12.7=83.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAGGAGCTGCACCGAG
R:
TTTTCCTCCACCGCATCAAGG
Band lengths:
155-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains