GgaINT0054707 @ galGal4
Intron Retention
Gene
ENSGALG00000008380 | DGKZ
Description
diacylglycerol kinase zeta [Source:RefSeq peptide;Acc:NP_001026363]
Coordinates
chr5:22954819-22955500:-
Coord C1 exon
chr5:22955380-22955500
Coord A exon
chr5:22954856-22955379
Coord C2 exon
chr5:22954819-22954855
Length
524 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
CGCACTCTTTCTCTCCACAGCCC
3' ss Score
11.86
Exon sequences
Seq C1 exon
TTCCAAGAGCTGCACCGAGCTGGAAGAGACCTGATGGTGCGAGACTCCTCTGGCCGAACTGTCCTCCACCATGCTGTCGTATCAGGGAGCAAGGACATCGTCAAATACATAATTGAGAATG
Seq A exon
GTGAGCTGGGCTGCTTCACTGTGGCCAGAATGCCACCCTTAGCAAAGCAGGCTGGCAGCCAATAACACCCGTCCCTCTGCTTAGAGGGAGTGCCCCTGGGTACAGCGTCCCATCCCATCGGATTTGCTATATCCTCCCGCTGTGACATGGGCTTTCCTTAGCATCTTTCTGCCAGTGCTGGCTGCCCCAGGCTGTTATCCCATCCTTGCTGTGACCAGCATGTCTCTGGGAAACATCTCCCAGTGTCATGCTTCTCCTTTCAGGGGAGCTGACCTGTTGTTTTTGGCAGCTCCCACTGAAATGCAAGCTGATTTATTTTTATTTGGCTATTTCTCTATAATGAATCCACAAGCAACTCTTGGGGTCAGATGCTGTTCTGGCCTGAGGGTTTTGGAGCCAGGCCCTTTGTGAGCGGTACAGATAGCAGCTCCTACAGCAGGCTGCAGGGTGCAACCGGGGAGTTGGTAGGCCCACCCCTGCCTTGTGGCCAGGTCTCACTTGCCACGCACTCTTTCTCTCCACAG
Seq C2 exon
CCCCTTCAGAAATCCTCGATGCCACGGAGGAAGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008380:ENSGALT00000038374:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.146 A=NA C2=0.769
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(57.1=100)
A:
NA
C2:
PF127962=Ank_2=PD(7.1=38.5),PF127962=Ank_2=PU(13.7=76.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]