DreINT0056557 @ danRer10
Intron Retention
Gene
ENSDARG00000014439 | dgkza
Description
diacylglycerol kinase, zeta a [Source:ZFIN;Acc:ZDB-GENE-111104-3]
Coordinates
chr7:38871677-38874418:+
Coord C1 exon
chr7:38871677-38871797
Coord A exon
chr7:38871798-38874381
Coord C2 exon
chr7:38874382-38874418
Length
2584 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATC
5' ss Score
4.14
3' ss Seq
CTGTCTCTGTTTTTCCACAGCAC
3' ss Score
11.51
Exon sequences
Seq C1 exon
TTGAAGGAGCTGCATAAGAAAGGGGCCGACCTGTGTGTGCAGGACCCTGCTGGACGGACCCTATTGCACTATGCTGTGGAAGTGGGCAGCAAGGAGATTGTCAAATACATCATTGATAATG
Seq A exon
GTAATCACAAATCACATCTGTACAGTATCATTTTACAAACACTGCTAGCGTAGGCAGAATGTTTTTGTCTCGGTACGGTTTATGTCTGTATGTCTCTTGTTCTTTCTGTTGAACAGTTAATGTAAAAGCTATGGAGAAATTCTTTGAAGAAGTAAAGTACAACTGTTATTGTCAGATGTGTCTCTTTCTTTCTCTCTCTCTCTCTCATTTTCTCTTTCTGTCTGTCTGTCCTTAAATACAGAATGGGGCAATGTTTTTGAACGGTTAAAGTCCATGTTTCAGTTACATGATTACTCCTATGTTTTTAGTTAGATCCCAGACACCGTGGAAATAAAAGTTTAATGTGTTTTTTGTACTATGAGAGTAAAAATGCACTTTTTTGCTATATCTCAAAATGTGAAAAAATATAATAATTTATTTATTTTTTTTTTATTTCGTCATTTTTAACCGGAAAAGATTAAAAGATAATCAGGCCTGGCTCAACATAAATGCTGTTTTTCCAACAGGTTCCTGCTCTGCAGAACACAGAAACATACAGACACTCTTAACATCTCATCCGTCAAGACATAAGAACATTACAAACAATTGCAAAATATACAACATAAGGAGAGACAAGCTGCTATCTCAGTGGCTATAGGGATAGTTGAGCATCAGATGAGGAGCTTAGGATTTTTAAAAAAAGTCTTATTGTCTTTAGATGTGGGCTTTTGTGAATACATAAAAGAGAGATCTCTGTCCATAACAGACATCCATTTGTTGCAGATCTGGTGGAACGATCAGTCCTTGTATTAATTATTATTGTATAAATCTGAATTTTGGCCCCAAAGCACATAGGGCTGCTGAGGTAGCACTATTTAAAATTTGATAGTACAGTTTAATCCCCGTGTTCATAATGAAATATTGAAATGATAAAGCATACTAAAGATGAAGCATAATAATAATAATAATAATCATAATAAAATTATTAAAACTAAGACATACTTTAATCTCGTATTTTAGGTTTGTCTAGAACAGGGTTATATACAAATTTATTTCAGCTTGTTTTCTTAAATAATTAATTATTTATAATTATTCTTAATTATAAAGGGCGAGGCAGTGGCGCAGTAGGTAGTGCTGTCGCCTCACAGCAAGACGGTCGCTTGGTTGCTGGTTCAAACCTCGGCTCAGTTGGCATTTCTGAGTGGAGTTTGCATGTTCTCCCTGCCTGTGCGTGGATTTCCTCCAGGTGCTCCGGTTTCCCCCATAGTCCAAAATGCTGAAGGTGAATTGGGTTTGCTAAATTGTCCGTAGTGTATGAGTGTGTGTGTGTGAATGTGTGTGTGGATGTTTCCCAGAGATGGGTTGCGGCTGGAAGGGCATCCGCTGCGTAAAAACTTGCTAGACAAGTTATCGGTTCATTCCACTGTGGCGACCCCGGATTAATAAAGGGACTAAGCCGACAAGAAAATGAATATTAGTTATAAAGTATTATTATTATTAATTATTGTATAATAATGTTACTTTTCTAAATAATGAGTAACACATACTAACACATTAATTTTAGAATTAATTAATATTTGAGTTACTTTTAAAAAATGCAATGCAAGTTACTTTTTAGTTTAGTGAATTCGCTTTAAAAAATTTAATTGCTGAAATAAAATAAACGTCATTTTATTAAACAGACAGAAAGAAAGATGGCAAAGACTTACATTTCTACGATAGAAATGTTCTCATTATTTTGAACACATAAGAAAATAAGGAAAAAAGGATTATCTAAACGCACAGTGATTTTACGTTTTAATTAGACAAAAAGTTGCATCACGGTGGCGCAGTGGGTTGCACATTTTTCATGTGTTTTTTTTTTTAAAGATAGATATATGAAGGTTATACAGTGTGTTTTTAATTGGAAAGCTCCTCTTTTTTAAAAAAAAAGAAGAGAAAAACTCTGCAATTTTTAAAAAGAGATCAAGATTCAGCCAGGTCAGAAAAAGTAACGCAAAAGTAACGTAAGGCATTACCTACCATAAAAAGTAACTAAGTAATGAAACTAGTTACTTTTATGCGGACTCAAGTTTGTAATGCATTACTTTCTTAAGTAACTTTTCTCAACACTGGACATACTTTAAATAATGCTTAAATCAAAAATCACAAAGTTAAACTGGAACTGAAAATATTACAACTAATAATAAAACTCCTATAGTATCTTAAGAATACCAAAATAATGTGGGTCTAAAAATGTAGTCGTATTTTTCATGTGTAAATGTAATTTTGTGAAGGAAAAAAAATCCTATTTACGCAAATCCCAAATTTGTCAACAATACATTATAAAAAAAAACAACAATACAAACTTTAGACCAACAGGTTTTCGTGAACAGAAGAAAAACATCAGGTGTGTCCAAACTTCTGACTGGTATTGTCTGCTTTCAGTCAGTGTTATGTTTGCTATCTGCTGTGTGTGGGGGGGTTGGTGTGTGAAGCAGGTCATCTCTCTCTCCCACGCAAGCTTTTTACAGCTCTTCATTAAGCAACACAACATCACCTCAGGGCACATGCTTTTGTGCAGATGCAAGGTTTGATGTTTTTTTCTGTCTCTGTTTTTCCACAG
Seq C2 exon
CACCCACCGATATCCTGGATGTAACAGAGAAAGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014439:ENSDART00000093009:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.256
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(44.9=100),PF127962=Ank_2=PU(1.3=2.4)
A:
NA
C2:
PF127962=Ank_2=PD(6.7=46.2),PF127962=Ank_2=FE(15.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]