BtaINT0048721 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013636 | DGKZ
Description
diacylglycerol kinase, zeta [Source:HGNC Symbol;Acc:HGNC:2857]
Coordinates
chr15:77247615-77247848:+
Coord C1 exon
chr15:77247615-77247735
Coord A exon
chr15:77247736-77247814
Coord C2 exon
chr15:77247815-77247848
Length
79 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
3' ss Seq
CTTATCCCGCCCTTCTCCCGCGC
3' ss Score
0.42
Exon sequences
Seq C1 exon
CTCCAGGAGCTGCACCGAGCTGGGGGTGACCTTATGCACCGTGTTGAGCGGAGCCGCACGCTCCTGCACCACGCGGTCAGCACCGGCAGCAAGGAAGTGGTCCGCTACCTGCTGGAGCACG
Seq A exon
GTGAGCTGTGCCCCTGGGGCCCCCGGGGCCGCGGGGAGGCTGCTGGGCCTCTCTAACCTCTTATCCCGCCCTTCTCCCG
Seq C2 exon
CGCCCACTGAGATCCTTGATGCCGTGGAGGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013636:ENSBTAT00000018128:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.439 A=NA C2=0.667
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(36.7=100)
A:
NA
C2:
PF127962=Ank_2=FE(10.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAGGAGCTGCACCGAG
R:
TTTTCCTCCACGGCATCAAGG
Band lengths:
155-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development