GgaINT0054707 @ galGal3
Intron Retention
Gene
ENSGALG00000008380 | DGKZ
Description
NA
Coordinates
chr5:25810242-25810923:-
Coord C1 exon
chr5:25810803-25810923
Coord A exon
chr5:25810279-25810802
Coord C2 exon
chr5:25810242-25810278
Length
524 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
CGCACTCTTTCTCTCCACAGCCC
3' ss Score
11.86
Exon sequences
Seq C1 exon
TTCCAAGAGCTGCACCGAGCTGGAAGAGACCTGATGGTGCGAGACTCCTCTGGCCGAACTGTCCTCCACCATGCTGTCGTATCAGGGAGCAAGGACATCGTCAAATACATAATTGAGAATG
Seq A exon
GTGAGCTGGGCTGCTTCACTGTGGCCAGAATGCCACCCTTAGCAAAGCAGGCTGGCAGCCAATAACACCCGTCCCTCTGCTTAGAGGGAGTGCCCCTGGGTACAGCGTCCCATCCCATCGGATTTGCTATATCCTCCCGCTGTGACATGGGCTTTCCTTAGCATCTTTCTGCCAGTGCTGGCTGCCCCAGGCTGTTATCCCATCCTTGCTGTGACCAGCATGTCTCTGGGAAACATCTCCCAGTGTCATGCTTCTCCTTTCAGGGGAGCTGACCTGTTGTTTTTGGCAGCTCCCACTGAAATGCAAGCTGATTTATTTTTATTTGGCTATTTCTCTATAATGAATCCACAAGCAACTCTTGGGGTCAGATGCTGTTCTGGCCTGAGGGTTTTGGAGCCAGGCCCTTTGTGAGCGGTACAGATAGCAGCTCCTACAGCAGGCTGCAGGGTGCAACCGGGGAGTTGGTAGGCCCACCCCTGCCTTGTGGCCAGGTCTCACTTGCCACGCACTCTTTCTCTCCACAG
Seq C2 exon
CCCCTTCAGAAATCCTCGATGCCACGGAGGAAGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008380:ENSGALT00000038374:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.146 A=NA C2=0.769
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(58.0=100),PF127962=Ank_2=PU(0.1=0.0)
A:
NA
C2:
PF127962=Ank_2=PD(11.0=61.5),PF127962=Ank_2=PU(13.9=76.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]