RnoINT0047111 @ rn6
Intron Retention
Gene
ENSRNOG00000017737 | Dgkz
Description
diacylglycerol kinase zeta [Source:RGD Symbol;Acc:70929]
Coordinates
chr3:80845232-80845458:-
Coord C1 exon
chr3:80845338-80845458
Coord A exon
chr3:80845266-80845337
Coord C2 exon
chr3:80845232-80845265
Length
72 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
3' ss Seq
TGCCTCTTCCCTGTCTGCAGCAC
3' ss Score
9.64
Exon sequences
Seq C1 exon
CTCCAGGAACTACACCGAGCAGGAGGTGACCTCATGCACCGCGACCATCAGAGCCGCACACTCCTGCACCACGCAGTCAGCACTGGCAGTAAGGAAGTGGTCCGCTATCTGCTCGATCATG
Seq A exon
GTAAGCTGTGTCCCTGGGGCTGGGTGGGAGGAAGGGGGTGCCAGGCTCTAAGTGCCTCTTCCCTGTCTGCAG
Seq C2 exon
CACCACCAGAGATCCTCGATGCTGTGGAGGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017737:ENSRNOT00000024280:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.463 A=NA C2=0.583
Domain overlap (PFAM):
C1:
PF138571=Ank_5=PU(7.0=9.8)
A:
NA
C2:
PF138571=Ank_5=FE(19.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAACTACACCGAGCAGGAG
R:
TTCTCCTCCACAGCATCGAGG
Band lengths:
151-223
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]