HsaINT0053153 @ hg19
Intron Retention
Gene
ENSG00000158560 | DYNC1I1
Description
dynein, cytoplasmic 1, intermediate chain 1 [Source:HGNC Symbol;Acc:2963]
Coordinates
chr7:95439704-95442649:+
Coord C1 exon
chr7:95439704-95439818
Coord A exon
chr7:95439819-95442507
Coord C2 exon
chr7:95442508-95442649
Length
2689 bp
Sequences
Splice sites
5' ss Seq
TAGGTACTT
5' ss Score
5.6
3' ss Seq
CTGACACTGCTCTTCACCAGTGC
3' ss Score
5.67
Exon sequences
Seq C1 exon
GCTGATATGCAGCAGAAGAAAGAACCCGTTCAGGACGACTCTGATCTGGATCGCAAACGACGAGAGACAGAGGCTTTGCTGCAAAGCATTGGTATCTCACCGGAGCCGCCTCTAG
Seq A exon
GTACTTAAAAGTGCTTCCTGTTACTATTCCTCAAAATCAACTTGCGTGGGATATACCATGTCCAGTGTTTACTATTCTTTTAAGTCTTTAGTTTTTTTTAATTTTTATTTTTAAAGACATTCTGTGGCTTATGGTTCAGGTTGCATGTGTTTTTGGAATTGAGGGGGCTGGAAGGAGATGGGAGGAAAGTTGTAGAATTGTCAGTAGTTTGGGGCTTACTGACTGATTAGATGGTCAACCTTCTCCACCGTGTTACTAGTAGATTATTTTATACTTGTTAAATGAGTTGCCACTTGGTAAATATAAGAAATCTTGGAATGTCTTATTAAATTGTTCCTCATTTTCATTGCTGAGTTCCAGTGTCTCTTTGCCAATCTAAATACTGTGGATCTGGGTTATGAATTTCATAACTACCACAGGCATAGAGTTAGTCTATGATGAAAATAGAAGGCACAGTGAGAATTTGAAGGAAAACAAAATGGTGGCAGATTAGCAGCCGATTAACAAGTTTAAATTAATTTGACTTTATTGTATTTTGATTTGATTACTAATTGGCATTTTCACTACAATACTCCTCCTCTAATTCGTTCATTCCTAGTTGGTTGTCTGTGACCTCATTTTATCACTAAAGCTTGGATATTGAATTATTGGTTTTCTTTGTGTTGAAGGTAACTTGTGCATATTTTGTTTATTCTGTCACTTACCTATGTATCTCTCATGTAATAGTTTTATTTTTCTTTTATCCTTTTGTTTTCCATACATTTAAGATTAATCCTAGGGTGTCTATAAAACTACATTATATCCAATATAGTTAAAAACCCTTTTGGAAGAATACATAAAAATAAATACAGTATTCAGATCTTTTGTTTAGAATACTTTCTTCTGAAGTTAATTCCATAATTTACTTTTATATTAAAATAAATTATCATTTATTTCCATAGTTAGTTAAACTAAGAATATAAATTATCCCATGTAGAACAAAATGGCAAATGTTTATATCAATGTGAATAAGAAAAAGAACAATATATAATAAGCTTAAAAATTATTAAGTATTGCTGGATGTAATTTAATACACACAAAACTAAAACACTATTAAAAATCATTTTATACTCAATCTCAATTTGTAATAGGTAAAAATAGTATGTTCAACAATGCTATAATAAGCCCCAATAAGATTAGATTCTTTGGTTTAATTTCTTCATGTTGTGGAAGATGTAACCTAGGGGACGTTATATTTGACTGATGGACCTTCTTTTCTACTTAGGAGCTGATACACATTTTTTTCTACTTAGTTGACATCTGATATGAGTTAGACACATTGCAATCAATTATATTTGTGCCTCAAAATAGCCTTTGAAATTATGTTGCAATGTGAACACTGGTTAAATACAATAATAGTATGTCCTAGTCTCCCCTACCCTACATAAAGCCAGTAATTAAACTTTAAGAACAAAACAGATTAACATCTCTAAACCATGACCAACTTTTGAAGTATCCTTGCATTACTGCCAACGGACTCTGGCAAGGGCCCTGTTTTCATTTTTCAGCCATCTCTTCGACTTACCCTCTGAGCTTACTCAGAGGGTAAGTAATCAGTGAATTAATTGTGGGACCACATGAAAATTCCTAGCTTCTCGACAGATCTGCCATTGTGTTATAGGATTTGGGTAAAACAGTTAAGCCCTTTACCCTATTAAGTAAATAAAAGGAAATTGCACATGATTGAAACCAAATGGGAATCTACATTTACGTACTGAAATTTCTTTCTATCCATATGGCTTCTCTGGCATATGTGATATTGAGAACCCGTTGAATTGCCTGGCCTGGAGCCATCTTGGCTATTTGGTGCAGCTTCTATCTGAAGGACATTTGGCTTGTATCTGAAGGAAGGGGGAAAAAATTGCATTGGCTTTAGCTTTTTTCTTTTATTATGCCTGCTCTCAGATTTTCAGCTTGTGCCGACCTTGATCTTTGAACTTGTCTCCTGTCTTCAGAGTGGCAGCTTACTTCTGTGCACATGGCAGGGTCTTCTAGAGCTGCTGGAGGCAAGGCAAAACAAGTCCCAAAGACAGTAAACAGTACAATGGGATGCAACTATTAATTAAATGTAAAAATAAAGCAGCCTGGCATTTTTCTTTGTTTTGAAAGAGACTTTTTAATTACCAGTTTCAACATTTACCCTTTCTCTATCTGTCACTTAGGCTCTCATGGCAAACAGCTTATATTCCACAGAGTACATTTCTCTCTCAATGCAGACATACAACAGATTTTTCTGACTGTCCTTGACCATTTAAAATTATTCAGAATCACTTATTTAATAACCTTTTAAAGTTTTATAGACACCTTGTTTTATTTTTAATAGGTCACATCTATACTAACAAAATAATGTGAAGAATCAGAATTATCTGGATGGTTCATGTTAGAGAGATATTTGACTTGAATTATCTGGATAGCTATTTTGATGCTTCATTTTACTTTGTTAGGGTGGACATGGCCTCAGAATCCCTAGGTTAATTCTGTCTAAATCATTTCAAATTTTAATTTCCAAAATACAAAAAATTCACTGGACTTTTTTCCTTTTCTTTCCTTTTTTTTTTTTTTCTTTATCCCATCTCAATGTCTCCTGGCCATACAACCACTTTAATTTGGGCCCATTTGTTTTGATTTGTCTGACACTGCTCTTCACCAG
Seq C2 exon
TGCAGCCGCTGCATTTTTTAACATGGGATACCTGTTATTTTCATTATTTAGTCCCAACCCCTATGTCTCCCTCCTCGAAATCAGTGAGCACTCCCAGTGAAGCTGGAAGCCAAGACTCAGGCGATCTGGGGCCATTAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158560-DYNC1I1:NM_004411:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.971 A=NA C2=0.743
Domain overlap (PFAM):
C1:
PF0076914=ERM=FE(35.2=100),PF0099215=Troponin=PD(42.2=69.2)
A:
NA
C2:
PF115403=Dynein_IC2=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)