BtaINT0053550 @ bosTau6
Intron Retention
Gene
ENSBTAG00000027134 | DYNC1I1
Description
Bos taurus dynein, cytoplasmic 1, intermediate chain 1 (DYNC1I1), mRNA. [Source:RefSeq mRNA;Acc:NM_001046516]
Coordinates
chr4:12998316-13001257:+
Coord C1 exon
chr4:12998316-12998430
Coord A exon
chr4:12998431-13001166
Coord C2 exon
chr4:13001167-13001257
Length
2736 bp
Sequences
Splice sites
5' ss Seq
TAGGTACTT
5' ss Score
5.6
3' ss Seq
CTGTTATTTTCATTATTTAGTCC
3' ss Score
7.03
Exon sequences
Seq C1 exon
GCTGACATGCAGCAGAAGAAAGAACCCGTTCCAGATGACTCTGACCTGGATCGCAAACGCCGAGAGACGGAGGCCCTGCTGCAAAGCATCGGGATCTCGCCAGAGCCCCCTCTAG
Seq A exon
GTACTTTAGAGTGCTTTGTGTTTTAATATAGCCTCAGATTTGACTTGTGTAGGATATACCATGTCCAGCGTTTACTATTCTTTTACATCTCCTTTTGTTTTTATGTTTTAAGAAATGCTTTGGCTTATGGCTCAGGTGTATTTATTTTTGGAATTGTGGGGGCTGGAAGGAGATAGGAGGACAGATTGTAGAGTGGTTAGCAATTGGCTGCTTACTGGCTGATGCTGCAGTCAACCTAACCCACTGCATTACTGTTAGAGTGTCTTACACTTGTTAAATGAGTTACCACTGGTAAATACCAGAAATCACAAGATGAAGAAGAAAAGCTTCATTTCCATTGCTGAATCCCAGCCTCTCTCTGCCAACCTAAATACTGTGAATCTGGTTATGAATTTCATAACCACCCCAGGCACAGAGTTATTCTATGATGAAAATAGAATGCTCGGTGGGAAACTTAAAGGAAAACTTGAAATGGTGGCAGATTAGCAGCTAATTAACATGTTTAAATTTCTTTGACTCTGTTGTGTATCTTGGTTTCATTGCTGATCGGCGTCTTTACTGCAACACCCTTCCTCCAACTCATTCATACCTGGTTACTTGTCCACGATCTCATTTTATTCAGGATTTGGATGTTGAACTATTTCTTTTATTTTTGTTGAAGGTAACTTGGTACATAATATGTTTATTCTGTCATTATACATCACTCATGTGATAAGTTATTTTATTTTTCTTTATCCATTTGCTTTCCATACATTTCAGAGTAATCCCAGGGTGTCTGTAAAACTACATGATATCCAATATAGTAAAATAAAAGCTTTAAAAATAATACATATAAATAAAGATAGTATCAGATCCCCTTTTATAAATCGTTCATCTTTTAATTCCATCATTGGCTTTTATATTAACATAAATTTTCATTTATTTCCGTAATTACTTAACAATAAAAATTATCCCATGAACAATAAAATGGCAAGTGTGTGTATCAGTATAAGTAAGTAAAAGGGCAAAATATAATAATCATATAAATTATTAAGTGTTTCTGGGTATCATTCAGTACATACACACTAAACTAAACACCATGAAAAAACATTTTATGCTCAACCTCAGTGTGTACTAATAGTAAGTAAAATCATATGTCTAACAATGATATAATAACCCCCAATAAGACGTTGATTATTTTGTTAGTTTCTTTGTGGTATGGGAGATGTAACCCACAGGATATTTGAGTGATGGGTCTTCTATGAGGAGCTGACAAACCTTTTTATTACTTAGTTGACAAGTAATACATGTTAGACCCTTGGCAATTATATTTTTGCCTCAAAATAGCCTTTGAAGTTCTGCTGCAGTGTGAACACTGGTTAAACACAACCGTAGAATATTTGTTCTCCCCTAACCTGCGTAAAGCCAGCAATTCAACCTTAAGAGCTAAACAGTTTAAATATCCCTAAACCATGACCAAATTCTGAACTATCCTGTCATCCCTGCCAAAGGGCTCTGGCAAAAGTGGAGCCCGTTTTCAACTTTTATCCATCCCTCCGACTTACCCTCTGACTTACTGCAAAGGGTAATCAGTGAATTAATTGTAGAACCACGTGAAAATTCCTAGTTTCTTGACAGATCTGCCATTGTGTTATAGGATTTGGGCAACATAGTTAAACCCTTTACCTTATTAAATAAATAAAAGGAAATTGCACATGATTGAAACCAAATGGGAATCTACACTATGCATTGAAGTTTCTTGCTGCCCATATGGCTTCTCTGGCAAGAGTGATACTGAGATCCCGTTCTCATCTGGCCTGGAGCCACCTTGGCTATTTGGTGCAGCTTCTATCTGAAGGACGTTTGGCTTGTATCTGAAAGATAGAGGGGGAAAATCCATTTGCATTTCCTCTAATTTATTTTCTTTTATTACCCTTGCTTTGAGAGTGCCAGTCTGCACTGACCTTGCTCTTTGAACCTGTTTCTCCTGTCTCCAGAATGGCGGTTTGCCTACGTGTACACGGCAGTGCTTTCTAGAGCTGCCAGATGCAAAGAACACAATTCCCAAACACAGTAAACAGTGCAAGGGATGCAACTATTAATTAAGTGTAAAAATAAAGCAGCCTGGCATTGTGCTTTGTTTTGAAAGAGATTTTTAAATTATTGGGTTCAACATTTACCCTTTTCTCTAACTGTCGTTTAGTCTCTCATAGCAAATGCAGCTTATACTCTACAGACAACAGACTTTCCTCCAAGAAATGCAAAACATGCAGCAGACTTTTCTGACTCCCTGTGACCTTCTAAAATTCCTCAGAATCACTTATTTCATAATCATTTAAAGTTTTATAGACACCTCGTTTTATTTTGAATAGGTCACATCTATACTAACAAAATAAAGTGGAGCATTAGAATTATCTGGATAGTTCATGCTAGAGAGGGATTTGCCTTGAATTATCCAGGTAACTGTTTTGATTCTCCATTTTACTTTGTTAAGGTGGACATGGCCTTAGAATCTCTAAGTTAATTCTGTCTAAATTCATTTCAAATTTTAATTTCCGAAGTATGAAAAATTCACTGGACTCTTTTCCTTTTCTTTTCTTTCCTTTTTTTTTTTTAAATCCTTATCCCATCTCAATCTCTCCTGGCCATACAATCACTTTAATTTGAGCCCGTTTGTTTTGATTTATCTGACACTGCTCTTCCCAGTGCAGCCGCTGCATTTTTTAACATGGGATACCTGTTATTTTCATTATTTAG
Seq C2 exon
TCCCAACCCCTATGTCTCCCTCCTCGAAATCAGTGAGCACTCCCAGTGAAGCTGGAAGCCAAGACTCAGGCGACCTGGGACCGTTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027134:ENSBTAT00000020774:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF115403=Dynein_IC2=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]