GgaINT0091987 @ galGal4
Intron Retention
Gene
ENSGALG00000009722 | DYNC1I1
Description
dynein, cytoplasmic 1, intermediate chain 1 [Source:HGNC Symbol;Acc:HGNC:2963]
Coordinates
chr2:24087892-24090805:+
Coord C1 exon
chr2:24087892-24088006
Coord A exon
chr2:24088007-24090714
Coord C2 exon
chr2:24090715-24090805
Length
2708 bp
Sequences
Splice sites
5' ss Seq
TAGGTATTT
5' ss Score
5.39
3' ss Seq
CTGTTATTTTCATTATTTAGTCC
3' ss Score
7.03
Exon sequences
Seq C1 exon
GCTGATCTACAGCAAAAGAAGGAGCCAGCTCAAGAAGATTCTGACCTAGACCGCAAGAGAAGAGAGACAGAAGCTTTGTTGCAGAGCATTGGCATATCCCCAGAACCACCTCTAG
Seq A exon
GTATTTAAGAGGAACATACTGTAAAGCATTCAACTCTGCCACAATGAATGCATTCTTTCTATTAAAGCATGCTTTGCTTTTTTTGATTTTTGGCTGTATTAGTGAAGTGAACTCTTCTGTTTGAATGCCTACCATACCATTTGCATATACCAGCTCATGGCATTTTGAGTACTTATCATTGCCAAAAACATCTGTTTCATTTCTCCAAGAAATTTTTGTATTGCAGGTTGATTTTGCATACCAGTAGTGATTTCTTTTCTGATGGACAATTAGCTCCTCTCTCCCACAAATAATATAACAAATGCTGTACCTCATTAGCCCCGATCTTTGTTTCATAAATGCAAGCATTTTCTAAGGAAGGTGGAGCATAGTTATGTGGGGACTCCCATTTATTTTCACTAAAATTCAAGCAAAACAGGAGAGAGAAAATAAAAAGACAAATCACAATGATCAGAAAGCTTATCAACAGATTATTTTTGTAGTTCTTGGAGCTGGACGTTTTGATATTTAAATTATAGAATCTAGAGCCCTCTGTTTTAGAAAAATATGTGGGAAAAATAGTATCTGAAATACATGATTAAGTTCTATCTGATGTATTAGGTGGCCCTAAAGTGAGAAATTTCCTTCCTTGCTTCCTTCCTTTTTTCCCTTTTTCTCTCCTCCCTGCCTTGCCTTGCCTTGCCCCTTTTCCTCTCACTTTCCCATTCCTTCTCTTTCAAGTGCTTTCCTCTCCTTTGAATACAGAATCACTCTCACTGTTTTAGCTGAAATATTGGCATCTCTGGAGGTACCAGGCTCTGTCATTAAATTCTTTGATATTGACTCTAGAATTTTACCCCTAGATTTTCTTGCCTGTAACAGTTAGGGGGAAAAAAAAAAGAAAAAAGAAAGAATAAATAAAGCAGAAGCCTTGATTTCAGAAAACACTTGCATAGTTCCTTATGAAAATAGATGGTGACATTCTGAATCATGCATTGAGGAATTCAGTCCCTAACTTGCATCAACCAACATTTACTGGGACAAGTTACCATTTTAATAGGTTATAATCTACTGATTGGAACTTTTCAAGACCACTTCTCAGAAAAAAATGTCTGCCAAGTAACTTTTGGGTTATTTTAAAGTATCATAAAGTATGTTTTGTAAATTACCTAGTGGTGTATATATAAATGCATCTCTTTGATAAAGTCTTAATGTTTGTGCATTTAGAATATTCATATTTATCTTCAAAATGTGGATTCATTTCCTTATAGAGTAAATGAACATGTATTAATGTTGCAAACTATCAGTTCTTATCTTAGTTAATTATTTTCTTTGATGCTATCGAAAGAACATGAAAATTCACATATAAGATGATCTTAATTAAACAGTAGTATTCTGTCCTCCTTAATTCCCTTTGTATACACTGACAATTAGTATACAAAGGAGAGATTAATTCTGCCTTCACATATGATGCCCAGATCCCACTGCGAACATGGAATACATAAAATGCCATGCCATACCTGTAACCTGCCAAAGGGCTGTCATGAAGATGAATTCACTTTCCATGCTGCATTCATTTCTGTGACAGTCTCTAGTAAGAATCTGCATGAAATGTTTGACCACATGGAAAATCCAAGTCTCTTGACAGGTCTGTCATTATACATTATAGAGCGTAACAAAATAGTTTAAAGTTTCACTCAGTTAAATCTATAAAAAGAAATGCACATGATTTAAACCAAATGGGAAACCTCACTGTTGCATTAGAACTCCTTTTTGTGTTTTATTCAGTGTGGCTGCTTTGAAGAATACTTGTGCTAAATCTTGACTGGAGCCATCCCTGCACTTTAAATATTTTTGAGAAACCATTTTAAAAGAAATCAAGATATTTCTACTTTTTTATTTGTTATTCCTTGCTGAAGAGCTTAAACTTGGGCTGACTTTGAGCTATGATCTTCCTTTCCTGTTAAAGGAAACAAAGCTGGATTTGCATGAATATGCCTCAAAAGCTCCAGCAAACCAAAGAGAAAATCATTTCTAGAGCGTGCAAATAGTATCTAAGCCAAGGGAAACATTTCCTTGAGCGTGGAAATCGTGTCTCATCCAAAATGGCAATCTAATACAACTTAAATTATTTAAGAAAAGATGTTTGCTAAGCAAATTAATGCGTATTCTCACCATCTTTGGGAAATGATTTTAACTTAGCTGGATTTCCTTATCTAACTTTTATTTTGGATGCCATTTCTGCACTGCAGTCTAAGAACATATCTAACGGGCAGCGGCTTTTAATTTAAATGGAAAATTTGAGAAGTTTGCTTGCTGTTTTGCCTCCTTGGCTACCAGAAGAGTTCACTTAGATTTCTGACAAGACGATCCCCCGGTATTTCTTCGTACATTTAAAATCTTTTGCAAGTCAGCTTTAAAATACAGCCAAGAAAAAAATGCTGTTTCTGCAGATATCTCCGCCACTGATTAGTTGTGGAATCACGTTGGGCTTTCAGTCCTGTCTAAATTCATGTCAGTTTTAACACTTCCAGAAGACTTAAAATTCACTTGACTCTCTTCCTTTTCTTTTTCTTTCCTTTCCTTATTTGCTTTCACCATTTCAAACTCTCCTAATCATTCATACACTATCATTTTGGTCCATTGGTTTTGATTTGTCTGACACTGCTCTTCATCAGTGCAGTCGCTGCATGTGTTAACATGGGATACCTGTTATTTTCATTATTTAG
Seq C2 exon
TCCCAACCCCTATGTCTCCCTCTTCGAAATCAGTGAGCACACCCAGTGATGCAGGCAGCCAGGACTCTGGAGATCTGGGACCCATAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009722:ENSGALT00000015824:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0076914=ERM=FE(27.3=100)
A:
NA
C2:
PF0076914=ERM=FE(21.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]