MmuINT0054173 @ mm10
Intron Retention
Gene
ENSMUSG00000029757 | Dync1i1
Description
dynein cytoplasmic 1 intermediate chain 1 [Source:MGI Symbol;Acc:MGI:107743]
Coordinates
chr6:5767030-5769791:+
Coord C1 exon
chr6:5767030-5767144
Coord A exon
chr6:5767145-5769733
Coord C2 exon
chr6:5769734-5769791
Length
2589 bp
Sequences
Splice sites
5' ss Seq
TAGGTACTT
5' ss Score
5.6
3' ss Seq
GTCTCCCTCTTCGAAATCAGTGA
3' ss Score
5.07
Exon sequences
Seq C1 exon
GCAGATATGCAGCAAAAGAAAGAGCCCGTTCAAGATGACTCCGATCTGGATCGCAAACGACGGGAGACAGAAGCTTTGCTTCAGAGCATTGGCATATCACCGGAGCCCCCTCTAG
Seq A exon
GTACTTCCCCAAGCTTGCGTTGCTACTCCTCTTGTGTAAATATACCATGTCCAGCGTTACTGTGCTCTTAAGTGTTAGCTTTATTGTTGTTTTCTATGCTTAAGAAAGAAAGCTAGGGCTTACTGTTCTAGTTGCATGTACTTTGTAGAAGTGAGAGGGCTGGAAGGACATGCGAATGTTGCTTAGTCATCAGCCTTTGCTAATGATACACTGGCTGATTATATGCTCATAGCTTCCCCTTGTGTCACTACCAGATTCGTTTATATTGTTAAGAGAGTATGTAGAAGACATCTTGGGATTTTTTTTAAGCATCAAATTGTTCTTTGCTTCTGTGGGTGAATCCCAACCTCGCTTTGCCTATTCAGACAATGCTAATCTGGTTATAAATACTGGGAACACTACAGACATAGAATTATCCCATGATGAAAATAGAGTTTTCAGTGGGAAATTTATTTGGCTCGTGTGTACCTTGATTTCATTGCTCGCTGACATTTCCACGGCAGCATTTCCTCCTCCTCCAACTCATTCACTTCTAGTTGATTGTCTGTGAAGTCTTTTGTCATGGAGGTCTGGGTACAGATTAATTTGTATTTGATTTGTTAAAGGTAGTTTGCATGAGCTTATTCTGTCACTATCTTGTGTATCTTTCATGGGTTCTTTTCTTTTTCTTTTCTTTATCTTCCATACATCTAAAAATAACCCAAAGGTGTCTGCAAAACTACATAATATCCACTACATTCAAAATAAAACCATTTAAATTCTGCACAGGAATAAATACTATATCAGGGCCATTTAAAATGTTTCATCTTTTAAATTCCATTCTTGGATTCCATATTAAAATAGAATCCCTTTTATTCTCATAGATACTTAAATTAAGAAAAAAAATTACCTATGTGAAATAATCAATATAAATAAGAAAAAGAATATATCCAACTTAAAATTAAGTATTGGTAAATATGATTTAGTGCATAAACATAAAACTAAAATCCTACTAAAAAGCATAACAGTGTATCTCAATTGCATGTAAAAAGCATATGCCTATTGCTATAATGAGCCCTCATAAAATTAGATTTTATTTAACTTCTTATTATGCAAGGTGTAATCTATAGAGGATTTGGCTGGTGGATCTTCTTTGAGAAGTTGGCAAACCTCTTTGTACTTAGCTGACATGTGATGTAAATTAGACATCTATCGATCAATTATATTTTGGCTTCAAAATAGTCTGAAATGTTGTAGTTGCTATGTCAATACTGGTTAAACCCAGTAGAAGTATATGTGATCATCCCTTACCCTGAAAAGAGCTGGTGATTAAATTTTAAAAACAAAATACTTGAGTATCCCCAGTCTGCAACTACCTTCTCAACTACACATGAATCCTTTCCAAAAGGCCCATTTTTCATCTCTCTTCCCAGCTTTCCCTCTACCCTAACACGAAGGGTAATCAGATAATTAATTGAAGAGCCACAAGGAAATGCCCAGTTCCTTGGCAATTCTGTCTTTGTGGTACAGAATTTGAGGGCAGAGAGAATAAAAACCTGTTAAACCTTATACCCTATTAAATAAATACAAGGGACTCTATGTTCATGCAGCCTCTTTCTGCACATGGCTTCCTTGGCATGTGTGATGAGTCCCCTAAATTGCCTGGCCTGGAGCCATTATGCCTCTTGGGTACAGCAAGTGGCTGATGGACATTTGGCTTAGATATGGAGGTTGCAGAAAGAAAACACATCTCTGTCTGTTTTGTTTTGTTTTGTTTTCCCTTGGTTATCCTTGCTCAGATTGTCAGCTGACCTGGATCTCTGAGCATCTTTCTTTCTCCCACTCTCATGGTGGCAGTTCACTTCTTGTCTTGTGTCAGCATCTACAAGAGCTGCTAGAGACAAAGAAAACAAGTCCCAAGTGAAGTAGAATGTAGGGTTGGGTGAAACCATTCATTAAATGTAAAAATAAAGCAGGCTGGCATTTTCCTTTGTTTTGAAAGAGATTGTTTTAATTACCAGGCTCAACATTTACCCTTCCCCTCTGTCATCCGATCTTAGCACAAAGTTGTTCATCCACCATGAACCCTTACATTTCTCTCCAAATTAGACAATCAATAGATCTCTCACCACTCTTGAGCATTTAATTGTTTAGGCTCTTCCAATTTCATAATGTTTAAAGTTTTATAGACACCTCATCTTTTAAATAGGTCACGTCTATACTAACAAAATAAAGTGAAGAATTAGAATGAGCTAGATAGTTCCTACCGAAAAAATGTAGGGTGAACTATCTGGATAGCTATGTGGTTCTCCGCTTTACTTCGTTAGGTGGACATGACCTTGGACTCCCTAAGTTAATTCTGTCTAAATTCATTTCAGACTCTCATTTTCCAAAATATGAAAAATTCACTTGACTTTCTTCCTTTTCTTTCCTTTTTTTTTAATCCCATTTCTATCTCTCCTGGCCATACAACCACTTTAATTTGGGCCCGTTTGTTTTGATTTGTCTGACACTGCTCTTCCCCAGTGCAGCCGTTGCATTTTTTAACATGGGATACCTGTTATTTTCATTATTTAGTCCCAACCCCTATGTCTCCCTCTTCGAAATCAG
Seq C2 exon
TGAGCACTCCCAGTGATGCTGGAAGCCAAGACTCGGGCGATCTGGGGCCATTAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029757:ENSMUST00000115556:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.956 A=NA C2=0.882
Domain overlap (PFAM):
C1:
PF0099215=Troponin=FE(8.7=100)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types