HsaINT1012032 @ hg38
Intron Retention
Gene
ENSG00000158560 | DYNC1I1
Description
dynein cytoplasmic 1 intermediate chain 1 [Source:HGNC Symbol;Acc:HGNC:2963]
Coordinates
chr7:95810392-95813337:+
Coord C1 exon
chr7:95810392-95810506
Coord A exon
chr7:95810507-95813246
Coord C2 exon
chr7:95813247-95813337
Length
2740 bp
Sequences
Splice sites
5' ss Seq
TAGGTACTT
5' ss Score
5.6
3' ss Seq
CTGTTATTTTCATTATTTAGTCC
3' ss Score
7.03
Exon sequences
Seq C1 exon
GCTGATATGCAGCAGAAGAAAGAACCCGTTCAGGACGACTCTGATCTGGATCGCAAACGACGAGAGACAGAGGCTTTGCTGCAAAGCATTGGTATCTCACCGGAGCCGCCTCTAG
Seq A exon
GTACTTAAAAGTGCTTCCTGTTACTATTCCTCAAAATCAACTTGCGTGGGATATACCATGTCCAGTGTTTACTATTCTTTTAAGTCTTTAGTTTTTTTTAATTTTTATTTTTAAAGACATTCTGTGGCTTATGGTTCAGGTTGCATGTGTTTTTGGAATTGAGGGGGCTGGAAGGAGATGGGAGGAAAGTTGTAGAATTGTCAGTAGTTTGGGGCTTACTGACTGATTAGATGGTCAACCTTCTCCACCGTGTTACTAGTAGATTATTTTATACTTGTTAAATGAGTTGCCACTTGGTAAATATAAGAAATCTTGGAATGTCTTATTAAATTGTTCCTCATTTTCATTGCTGAGTTCCAGTGTCTCTTTGCCAATCTAAATACTGTGGATCTGGGTTATGAATTTCATAACTACCACAGGCATAGAGTTAGTCTATGATGAAAATAGAAGGCACAGTGAGAATTTGAAGGAAAACAAAATGGTGGCAGATTAGCAGCCGATTAACAAGTTTAAATTAATTTGACTTTATTGTATTTTGATTTGATTACTAATTGGCATTTTCACTACAATACTCCTCCTCTAATTCGTTCATTCCTAGTTGGTTGTCTGTGACCTCATTTTATCACTAAAGCTTGGATATTGAATTATTGGTTTTCTTTGTGTTGAAGGTAACTTGTGCATATTTTGTTTATTCTGTCACTTACCTATGTATCTCTCATGTAATAGTTTTATTTTTCTTTTATCCTTTTGTTTTCCATACATTTAAGATTAATCCTAGGGTGTCTATAAAACTACATTATATCCAATATAGTTAAAAACCCTTTTGGAAGAATACATAAAAATAAATACAGTATTCAGATCTTTTGTTTAGAATACTTTCTTCTGAAGTTAATTCCATAATTTACTTTTATATTAAAATAAATTATCATTTATTTCCATAGTTAGTTAAACTAAGAATATAAATTATCCCATGTAGAACAAAATGGCAAATGTTTATATCAATGTGAATAAGAAAAAGAACAATATATAATAAGCTTAAAAATTATTAAGTATTGCTGGATGTAATTTAATACACACAAAACTAAAACACTATTAAAAATCATTTTATACTCAATCTCAATTTGTAATAGGTAAAAATAGTATGTTCAACAATGCTATAATAAGCCCCAATAAGATTAGATTCTTTGGTTTAATTTCTTCATGTTGTGGAAGATGTAACCTAGGGGACGTTATATTTGACTGATGGACCTTCTTTTCTACTTAGGAGCTGATACACATTTTTTTCTACTTAGTTGACATCTGATATGAGTTAGACACATTGCAATCAATTATATTTGTGCCTCAAAATAGCCTTTGAAATTATGTTGCAATGTGAACACTGGTTAAATACAATAATAGTATGTCCTAGTCTCCCCTACCCTACATAAAGCCAGTAATTAAACTTTAAGAACAAAACAGATTAACATCTCTAAACCATGACCAACTTTTGAAGTATCCTTGCATTACTGCCAACGGACTCTGGCAAGGGCCCTGTTTTCATTTTTCAGCCATCTCTTCGACTTACCCTCTGAGCTTACTCAGAGGGTAAGTAATCAGTGAATTAATTGTGGGACCACATGAAAATTCCTAGCTTCTCGACAGATCTGCCATTGTGTTATAGGATTTGGGTAAAACAGTTAAGCCCTTTACCCTATTAAGTAAATAAAAGGAAATTGCACATGATTGAAACCAAATGGGAATCTACATTTACGTACTGAAATTTCTTTCTATCCATATGGCTTCTCTGGCATATGTGATATTGAGAACCCGTTGAATTGCCTGGCCTGGAGCCATCTTGGCTATTTGGTGCAGCTTCTATCTGAAGGACATTTGGCTTGTATCTGAAGGAAGGGGGAAAAAATTGCATTGGCTTTAGCTTTTTTCTTTTATTATGCCTGCTCTCAGATTTTCAGCTTGTGCCGACCTTGATCTTTGAACTTGTCTCCTGTCTTCAGAGTGGCAGCTTACTTCTGTGCACATGGCAGGGTCTTCTAGAGCTGCTGGAGGCAAGGCAAAACAAGTCCCAAAGACAGTAAACAGTACAATGGGATGCAACTATTAATTAAATGTAAAAATAAAGCAGCCTGGCATTTTTCTTTGTTTTGAAAGAGACTTTTTAATTACCAGTTTCAACATTTACCCTTTCTCTATCTGTCACTTAGGCTCTCATGGCAAACAGCTTATATTCCACAGAGTACATTTCTCTCTCAATGCAGACATACAACAGATTTTTCTGACTGTCCTTGACCATTTAAAATTATTCAGAATCACTTATTTAATAACCTTTTAAAGTTTTATAGACACCTTGTTTTATTTTTAATAGGTCACATCTATACTAACAAAATAATGTGAAGAATCAGAATTATCTGGATGGTTCATGTTAGAGAGATATTTGACTTGAATTATCTGGATAGCTATTTTGATGCTTCATTTTACTTTGTTAGGGTGGACATGGCCTCAGAATCCCTAGGTTAATTCTGTCTAAATCATTTCAAATTTTAATTTCCAAAATACAAAAAATTCACTGGACTTTTTTCCTTTTCTTTCCTTTTTTTTTTTTTTCTTTATCCCATCTCAATGTCTCCTGGCCATACAACCACTTTAATTTGGGCCCATTTGTTTTGATTTGTCTGACACTGCTCTTCACCAGTGCAGCCGCTGCATTTTTTAACATGGGATACCTGTTATTTTCATTATTTAG
Seq C2 exon
TCCCAACCCCTATGTCTCCCTCCTCGAAATCAGTGAGCACTCCCAGTGAAGCTGGAAGCCAAGACTCAGGCGATCTGGGGCCATTAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158560:ENST00000447467:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.935 A=NA C2=0.872
Domain overlap (PFAM):
C1:
PF0099215=Troponin=PD(42.2=69.2),PF0076914=ERM=FE(35.2=100)
A:
NA
C2:
PF115403=Dynein_IC2=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains