HsaINT0063007 @ hg38
Intron Retention
Gene
ENSG00000171931 | FBXW10
Description
F-box and WD repeat domain containing 10 [Source:HGNC Symbol;Acc:HGNC:1211]
Coordinates
chr17:18749722-18750137:+
Coord C1 exon
chr17:18749722-18749922
Coord A exon
chr17:18749923-18750009
Coord C2 exon
chr17:18750010-18750137
Length
87 bp
Sequences
Splice sites
5' ss Seq
TAAGTATGC
5' ss Score
2.72
3' ss Seq
GTCCATCTTTTTTTTTCCAGGAA
3' ss Score
10.54
Exon sequences
Seq C1 exon
AGGAACCATGGAGGAATTCACTCCGGTGTATATCCGAAATGAATAGGCTGTTTTCTGGAAAAGGAGACATAACCAAGCCAGGGTACGATCCCTGCAATCTATTGGTTGACCTGGATGACATCAGAGACCTGTCTTCTGGGTTCAGCAAATACCGAGACTTCATCCGTTACCTGCCCATCCACCTCTCCAAGTACATTCTAA
Seq A exon
GTATGCTGGGGTGTATGAGGGGATTTCCCAGACACCTCCCCTCTTGGCCCAGTTCTGGGGTTTCTGGGTCCATCTTTTTTTTTCCAG
Seq C2 exon
GAATGCTGGATAGACACACCCTGAACAAGTGCGCCTCTGTGAGCCAGCACTGGGCCGCCATGGCTCAACAGGTCAAGATGGACTTGTCAGCGCACGGCTTCATTCAGAACCAGATTACCTTCTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171931:ENST00000301938:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGTCTTCTGGGTTCAGCA
R:
GTGCGCTGACAAGTCCATCTT
Band lengths:
170-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains