HsaINT0065155 @ hg19
Intron Retention
Gene
ENSG00000161791 | FMNL3
Description
formin-like 3 [Source:HGNC Symbol;Acc:23698]
Coordinates
chr12:50043474-50044661:-
Coord C1 exon
chr12:50044459-50044661
Coord A exon
chr12:50043709-50044458
Coord C2 exon
chr12:50043474-50043708
Length
750 bp
Sequences
Splice sites
5' ss Seq
TACGTGAGG
5' ss Score
3.67
3' ss Seq
GGTCCCTCCCTCCTCCACAGGTT
3' ss Score
10.8
Exon sequences
Seq C1 exon
GACCTGGATCTTGATAAGTTTGAAGAATTATTCAAGACAAAAGCGCAGGGCCCTGCCCTTGACCTCATCTGCTCCAAAAACAAGACAGCGCAAAAAGCTGCCAGCAAGGTGACTCTGTTGGAAGCCAATCGTGCCAAGAACCTGGCCATCACCCTACGCAAGGCTGGCCGCTCGGCTGAGGAGATCTGCAGGGCCATTCATAC
Seq A exon
GTGAGGCTCCCACTGACCTGGCTCTGGTCCCTAGTCTGTTGGCAACCCAGTTCTCCACCCAGGAGCCTGGGTTTCCCTAGATTCCAGGTCATCTGACAGAACTCCCTCACATCCCCCTAGTCATCCACTGGCTTGGCTAGAATTTACTGCATCTGTGCTGGCAGTTCAGCCCAGACCTTCACCCAAGGAGCTCTCAGTCTATTGGGAACAGTGCAGTAACACTGAGTGATACCACCAGGATGGTAGAAGTATACAGGCAGCTTTGGGAGAATAGGGAGGTTCATGTAGCTGAGCTTGGTGATGAATGAGGGAAGCCTTCCCAGAGGAGGTAATGTCTCAACTGGGACCTGAAGAAAAGATATGAGTTAGTCCAGTTCAGGGCCTGGAGGGAGAAGCATAGTGCCTTGGGTACTAAAAATTGAATCTGGCTTTAGTGTAGGGAGAGGAGCAGGAGAAGGTAGAGAGTTGGGCAGAAGTCTTGCAGGCTGGACCTCGTAAGCCATGCTCAGGTGTTTGGACTTCACCCTAGGTACAGTGGGAGTACATCAAAGGGCTTATTAAACAGGAGCATGGAGTGTTCCCCCGGGATCATTGCTGGTGCTGTGACAGATGATGCAATGGGTCCTTTGCCTTTGGCTGTGTTCCGTGTACAGTCCCCTGTCCAGTTCTTCTAGGAGCTTGGAGAATAAAAGGGATGAGGGAAAACGTGGAGAGATGTGAGAACTGAGGTGGTCCCTCCCTCCTCCACAG
Seq C2 exon
GTTTGACTTGCAGACACTACCTGTGGACTTCGTGGAGTGCCTGATGCGCTTCCTGCCCACAGAGGCTGAGGTAAAGCTGCTGCGGCAATATGAGCGGGAGCGGCAGCCCCTGGAGGAGTTGGCAGCTGAGGACCGCTTCATGCTGCTCTTCAGCAAGGTGGAACGGTTGACCCAGCGAATGGCTGGCATGGCCTTCCTGGGGAACTTCCAGGATAACCTGCAGATGCTCACACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000161791-FMNL3:NM_175736:17
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(18.3=100)
A:
NA
C2:
PF0218118=FH2=FE(21.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCAAGACAAAAGCGCAGGG
R:
AACCGTTCCACCTTGCTGAAG
Band lengths:
342-1092
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)