MmuINT0065138 @ mm10
Intron Retention
Gene
ENSMUSG00000023008 | Fmnl3
Description
formin-like 3 [Source:MGI Symbol;Acc:MGI:109569]
Coordinates
chr15:99321631-99322397:-
Coord C1 exon
chr15:99322195-99322397
Coord A exon
chr15:99321866-99322194
Coord C2 exon
chr15:99321631-99321865
Length
329 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGG
5' ss Score
5.78
3' ss Seq
GTGTTGTTCATCCTACACAGGTT
3' ss Score
8.89
Exon sequences
Seq C1 exon
GACTTAGACCTGGACAGGTTTGAAGAGTTATTTAAGACAAAAGCCCAGGGCCCTGCTCTTGATCTCATCTGCTCCAAGAATAAGACAGCACAAAAGGCTGCCAGCAAGGTGACCCTTTTGGAAGCCAATCGTGCCAAGAACCTGGCTATCACCCTTCGCAAGGCTGGGCGCTCAGCTGAGGAGATCTGCAGGGCCATCCACAC
Seq A exon
GTGAGGCTCCCACCAACTTGTGCCTGGTCCCCAGATAGCTGTTGTCCCAGTTATCCCCACAGCACCTGGGTTTCCCTGGATTCCAGGGTTCCTGACAGGACTTGCTCACTTTTCTCAGTTACCCACTAACCAGAGCAGAGCATACTGACTCCAGGCTGGGTCTCAGGCTCAGTGAGAGAAGCTGCATGTTCTGCCCAGTAGGAAGAGTTTATCGGGCGGGAACAGCATCAGCAGCTGTGTCCTGTGTATTGCTCTCTAGTCCTTCTAAGGAGAAGGGAAGATGTGGACAGATGTCACACCTGAAGTGCTGTGTTGTTCATCCTACACAG
Seq C2 exon
GTTTGACTTACAGACACTACCTGTAGACTTCGTGGAATGCCTGATGCGCTTCCTGCCTACAGAGGCAGAGGTGAAACTGTTGCGGCAGTATGAGCGTGAACGACAGCCACTAGAGGAGCTGGCAGCTGAGGACCGCTTCATGTTGCTCTTCAGCAAGGTGGAACGGCTGACCCAGCGAATGGCTGGCATGGCCTTTCTTGGCAACTTCCAGGACAATCTGCAGATGCTCACACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023008:ENSMUST00000088233:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(18.3=100)
A:
NA
C2:
PF0218118=FH2=FE(21.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACAAAAGGCTGCCAGC
R:
CGGTGTGAGCATCTGCAGATT
Band lengths:
352-681
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types