HsaINT0065155 @ hg38
Intron Retention
Gene
ENSG00000161791 | FMNL3
Description
formin like 3 [Source:HGNC Symbol;Acc:HGNC:23698]
Coordinates
chr12:49649691-49650878:-
Coord C1 exon
chr12:49650676-49650878
Coord A exon
chr12:49649926-49650675
Coord C2 exon
chr12:49649691-49649925
Length
750 bp
Sequences
Splice sites
5' ss Seq
TACGTGAGG
5' ss Score
3.67
3' ss Seq
GGTCCCTCCCTCCTCCACAGGTT
3' ss Score
10.8
Exon sequences
Seq C1 exon
GACCTGGATCTTGATAAGTTTGAAGAATTATTCAAGACAAAAGCGCAGGGCCCTGCCCTTGACCTCATCTGCTCCAAAAACAAGACAGCGCAAAAAGCTGCCAGCAAGGTGACTCTGTTGGAAGCCAATCGTGCCAAGAACCTGGCCATCACCCTACGCAAGGCTGGCCGCTCGGCTGAGGAGATCTGCAGGGCCATTCATAC
Seq A exon
GTGAGGCTCCCACTGACCTGGCTCTGGTCCCTAGTCTGTTGGCAACCCAGTTCTCCACCCAGGAGCCTGGGTTTCCCTAGATTCCAGGTCATCTGACAGAACTCCCTCACATCCCCCTAGTCATCCACTGGCTTGGCTAGAATTTACTGCATCTGTGCTGGCAGTTCAGCCCAGACCTTCACCCAAGGAGCTCTCAGTCTATTGGGAACAGTGCAGTAACACTGAGTGATACCACCAGGATGGTAGAAGTATACAGGCAGCTTTGGGAGAATAGGGAGGTTCATGTAGCTGAGCTTGGTGATGAATGAGGGAAGCCTTCCCAGAGGAGGTAATGTCTCAACTGGGACCTGAAGAAAAGATATGAGTTAGTCCAGTTCAGGGCCTGGAGGGAGAAGCATAGTGCCTTGGGTACTAAAAATTGAATCTGGCTTTAGTGTAGGGAGAGGAGCAGGAGAAGGTAGAGAGTTGGGCAGAAGTCTTGCAGGCTGGACCTCGTAAGCCATGCTCAGGTGTTTGGACTTCACCCTAGGTACAGTGGGAGTACATCAAAGGGCTTATTAAACAGGAGCATGGAGTGTTCCCCCGGGATCATTGCTGGTGCTGTGACAGATGATGCAATGGGTCCTTTGCCTTTGGCTGTGTTCCGTGTACAGTCCCCTGTCCAGTTCTTCTAGGAGCTTGGAGAATAAAAGGGATGAGGGAAAACGTGGAGAGATGTGAGAACTGAGGTGGTCCCTCCCTCCTCCACAG
Seq C2 exon
GTTTGACTTGCAGACACTACCTGTGGACTTCGTGGAGTGCCTGATGCGCTTCCTGCCCACAGAGGCTGAGGTAAAGCTGCTGCGGCAATATGAGCGGGAGCGGCAGCCCCTGGAGGAGTTGGCAGCTGAGGACCGCTTCATGCTGCTCTTCAGCAAGGTGGAACGGTTGACCCAGCGAATGGCTGGCATGGCCTTCCTGGGGAACTTCCAGGATAACCTGCAGATGCTCACACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000161791:ENST00000352151:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(18.3=100)
A:
NA
C2:
PF0218118=FH2=FE(21.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCAAGACAAAAGCGCAGGG
R:
AACCGTTCCACCTTGCTGAAG
Band lengths:
342-1092
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development