RnoINT0061664 @ rn6
Intron Retention
Gene
ENSRNOG00000056297 | Fmnl3
Description
formin-like 3 [Source:RGD Symbol;Acc:1583854]
Coordinates
chr7:140986037-140986845:-
Coord C1 exon
chr7:140986643-140986845
Coord A exon
chr7:140986272-140986642
Coord C2 exon
chr7:140986037-140986271
Length
371 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGG
5' ss Score
5.78
3' ss Seq
GTGCTGTTCATCCTACACAGGTT
3' ss Score
8.65
Exon sequences
Seq C1 exon
GACTTAGACCTGGACAAGTTTGAAGAATTATTTAAGACAAAAGCCCAGGGTCCTGCCCTTGACCTCATCTGCTCCAAGAATAAGACAGCACAAAAGGCTGCCAGCAAGGTGACCCTTTTGGAAGCCAATCGTGCCAAGAACCTGGCTATCACCCTTCGCAAGGCTGGGCGCACAGCTGAGGAGATCTGCAGGGCCATCCACAC
Seq A exon
GTGAGGCTCCCACCAACTTGGCCCTGGTCCCCAGACAGCTGTTGTCCCAGTTGTTCCCACAGCTGCTGGGTCTCCCTAGATTCCAAGGTTCCTGATAGGACTTGCTCATCCTTCTCCATTACCACTGACCAGAGCAGAGCGTACTGACTCCAGTCTGAATCTCAGGCTCAGGGAGAGAAGCTGCATGTTCAGCGCAGAAGAAAGAGTGTATCACCATGTTAGCAGAGAGCAAAGACAGGAGAGCCAGTCCTGAAGCAATGGTGCTCTGCCTCTAGCTGTGTCCTGTGTATTGCTCTCCAGTCCTCCTAAGGATGAGGGGAAGATGTGGACAGAGGTCAGACCTGAAGTACTGTGCTGTTCATCCTACACAG
Seq C2 exon
GTTTGACTTACAGACACTACCTGTAGACTTCGTGGAATGCCTGATGCGCTTCCTGCCTACAGAGGCTGAGGTGAAACTGTTGCGGCAGTATGAGCGAGAACGACAGCCCCTAGAGGAGCTGGCAGCTGAGGACCGCTTCATGTTGCTCTTCAGCAAGGTGGAACGGTTGACCCAGCGAATGGCTGGCATGGCCTTTCTGGGCAACTTCCAGGACAATCTGCAGATGCTCACACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056297:ENSRNOT00000092068:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(18.3=100)
A:
NA
C2:
PF0218118=FH2=FE(21.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGACAAAAGCCCAGGGTCCT
R:
ATTCGCTGGGTCAACCGTTC
Band lengths:
350-721
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]