BtaINT0063194 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016593 | FMNL3
Description
formin-like 3 [Source:HGNC Symbol;Acc:HGNC:23698]
Coordinates
chr5:30366759-30367981:+
Coord C1 exon
chr5:30366759-30366961
Coord A exon
chr5:30366962-30367746
Coord C2 exon
chr5:30367747-30367981
Length
785 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGG
5' ss Score
5.78
3' ss Seq
GGTTCCTCCCTCCTACACAGGTT
3' ss Score
8.31
Exon sequences
Seq C1 exon
GACCTGGACCTGGACAAGTTTGAAGAACTGTTCAAGACAAAAGCCCAGGGCCCTGCCCTCGATCTCATCTGCTCCAAGAACAAGACAGCACAAAAGGCTGCCAGCAAGGTGACCCTGTTGGAAGCCAATCGTGCCAAGAACCTGGCCATCACCCTACGCAAGGCTGGCCGCTCAGCTGAGGAGATCTGCAGGGCCATCCACAC
Seq A exon
GTGAGGCTCCCACTGAACTTTCCCTGGTCCCCAGCTGTTGGTAACCCACTTAGGATCTCCACCTGGGACCCCAGCCTTCCCTGGATTCCAGGGTATCGACAGAACTCCCTCAGTCATCCAGTGGCTTGGCCAGAACTTACTACATCTGTGCTGTGTGCCAGACACTGTATGAGGTGCAGGGTAGTCAGCCCAGACCTTCCCTCAGGGAGCTCCCAGTCTAGTAGGAACAGTCCAGTAACACTGGGTGGTAACCACCAAGATGATGGAGGTACAGGAGGCTTTGGGAGAACAGCGAGGGCCAGGTAGCCGAGCTTGGTGATCAGGGAAGGCTTCCTAGAGGAGGCGATGTCTCACTTGCGACCTGAAGGATGTATGTGTATATAAAGTGCAGGTTGGGGCCTAGAGGGAGAGGCATGGTGCCCTGGATACTGAAAATTGACTCTGGCTTTAGTGTAAGGAGGGGAGCCAAAGAGACAGAGCAGAGAGGTGAGCAGAAGTCTTGCAGGCTGGGCCTCCTAAGCCACATCTGGGAGTTAAAACTTCTTAGCTGCAGAGGGAAGATACTGAAGAGTTCTTAAACAAGAATGGACTGTGCCTCTAGGACTTTTCCTGGTGCTGAGTAACATCAGTACTGGAGTTACTGGAGGTGAGGCAGTGAGTCCTCTGCCTCTGGCTGTGTGCTGCTCAAGACCCTGCCCTCCCTCCTTGCAGGAACTGGATAATGAAGGGATGACAGATACTGTGGGCAAAGGCAAGACCCAAGGTGGTTCCTCCCTCCTACACAG
Seq C2 exon
GTTTGACCTCCAGACACTGCCCGTTGACTTCGTGGAGTGCCTGATGCGCTTCCTGCCCACGGAGGCGGAGGTGAAGCTGCTGCGGCAGTACGAGCGGGAGAGGCAGCCGCTGGAGGAGCTGACGGCTGAGGACCGCTTCATGCTGCTCTTCAGCAAGGTGGAGCGGCTGACCCAGCGAATGGCTGGCATGGCCTTCCTGGGCAACTTCCAGGACAACCTGCAGATGCTCACGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016593:ENSBTAT00000022075:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(18.3=100)
A:
NA
C2:
PF0218118=FH2=FE(21.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCCAAGAACAAGACAGCA
R:
GGTTGTCCTGGAAGTTGCCC
Band lengths:
352-1137
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]