HsaINT0065337 @ hg19
Intron Retention
Gene
ENSG00000137942 | FNBP1L
Description
formin binding protein 1-like [Source:HGNC Symbol;Acc:20851]
Coordinates
chr1:94006599-94009773:+
Coord C1 exon
chr1:94006599-94006613
Coord A exon
chr1:94006614-94009663
Coord C2 exon
chr1:94009664-94009773
Length
3050 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
3' ss Seq
GATTTAGATTCTCTTTTCAGGGC
3' ss Score
7.64
Exon sequences
Seq C1 exon
TGGTCGGTGAAGATG
Seq A exon
GTAAGCCTTATGTGCTGATCTATATACTGTGCCAACATTAAGTAATCTCAAAACATTGTTTTGTTTAATTCAAAACAAGTGGTAAATTACATCCCACGTTTTCACCTTGTGTGTTTTTTCTTTTTATAGTTTCATAGTCCAGCATATGCCAGTACTCTTGATGTCATAAGATTAGAAAATGTGGTTAATTGTCATCAACCCATTAAGTTCTTAAATGTCATTGAATGGAGTCCTTGTCATGTTACAGAGGAGCGTAAAATTGTGGTTAAACATTTTTTAAAGATTACATGGTAGAGCCACAGTTTGTTATGCAGAAGGAAAATTTAGCAAATATTATTTTGCTTAATAGCCTTTAAAAAATCGTATAAATTTGATTTGTAGTTTTATCCCCAGAGTCATTAGATTTTTCCAAAAAAAGAAAGAAAAATTTCAAACTAGTATCATTATGGAGTTAGTCCTTGGTTCTTCTGTGCTATTGAAGGAGAATAGAAACACAAATGATCTAAATATCCTGTGTGTGTTTGTGTGGGGGGTGGGGCGGGGCGGGGAAGGTGTGTGTGTGTTTGGGATGTTCCTTGGTATGTTTATTTCAAACAAATTAATGGATCTACATTAGGAACTAACCCCAAAATTATTGTATAGGAAGCTACTGGAAAATAGACCACTCTTTTTTACATTGTTGGAATCAGCCTTTTATAAATTCCTTTGTAGTAAGAGAGGTTGTTAAATGCCCCAGAGGTCTTCTGAACATCCATAGGAAATAAAGTTAAGTTTAATTCTCATATTCTATGTAAGAATAGAGTTCCAATGTCAAATGGGATATTAGAAATGTAAGTGCCTCAGTGTTTACTGTTCATAAATTTGAGAACAGGGTTTGATAAGGGATAAGTGGAATTCTGGCAGATTTACTTGTAGGTTATTGTGAGTTTATCATAATTTTGACAACAAAAAAAAACTCCACAGTATGTTGAAATGCATTTCTTCATTTTATTCAATAATTTTTCAAGATTTTTAGAAATATTTTTAAAAATCTAAATTAAGAAGTTTATTTTTGGCATATATATATACTAGTTTTCAAAACTTGTACTCCTTTTCTGTAATCCCAGCTATTTGGGAGGCTAAGGCGGGAGGATTGGTTGAGCCCAGGAGTTCGAGGCTATAGTGAGCCATGAGAGCTATGATCACTCAACTGCATTCCATTGTGGGCAACAGAATGAGACCCTATCTCTACAAAAAACCTTCAACTCCAAAGTAGATTAAATATGACAAATTTATGTTGCAAATTAACCAGTAAATCTAAAGGAACTCAACAAAGGAAATTTCACCATTGATTTATTTAGGCCAGATTGGGTTGATTGATATCCTTGTTTCTGGTGATTGGTAAATGAAAAAAAAAAAAAAAAAAAAAAAGCAACACTTAGGATGCCCTACTTTTTTCTAGCAAGCTTGTTGAATATCCATAATCTACAGGCCACTGGGGAAAGAGGCTAGGGATTCTGTTATTAATTAAATGTTACATTTAATTATAGCTCATCCTAGGAGTGAGTTTTCTCTTTTCTGAAAGTAAGTGACTCATTCTTACACATGGTGAAATAAAGCTATTTAGCATATGTTACAGGCATAAGTGGCCCAAAGAGCAAGATCGTATTTGTTTTGAGAGCTCCTTTTAGCATCACTTTAACAAATTTGAATATTTATATTCTTTTTTCTTTTCTTTACCTTTTTTTTTTTTTTTTTTTTTTAAAAGACGGAGTCTCGCTCTTGTCGCCCAGCCTGGAGTGCAATGGCGCGATCTTGGCTCACTGCAACCTCTGCCTTCCGGGTTCAAGTGATTCTCCTGCCTCAGCCTCTCACGAGTAGCTGGGATTACAGGCGCCTGCCACCACGCCTGGCTAATTTATTGTATTTTTAGTAGAGACAGGGTTTCATCATGTCGGCCAGGCTCCAGTCTGGCCTCAAACTCCTGACCTTAGGTGATCCACCCGCCTCAGCCTCCCAAAGTGTTGGGATTACAGGCGTGAGCCACTGCGCCTGGCCTTATTCTTAGAATAACCATTTTGAAAAGAAAATGAATAGTGACAGGCATCATCAATTTCTGGAGTATATATAAAGATTTAAGTAATATAGGTTTATATTAAATAGATTCAATAGCGGCTAATATTGGTTCTGTTGTAATCTGTAATATAAGTAACAGTGATTAAAATAACATTTAAGGGAAAAGGTGTCATTTGGATCAGATGTTTACGTTTAAATACTAGTACTTTTTCTTAAATTGCATAGTTTTTTGAATATCAAAACTTTAAAAAATTTTCAGACATCAAGGATCTTTCCTAAAGAAGGATTTTATCCTTCTTTCAGTAACAACTGAGGTATGTTATTTGGTTTACAAAAGGTTAATTGAAAATATACACTTGTTTGAATATAATTTCTGCTCAGTGGATAGTTCTATCTTTGGTTTTTAATGACCAGGTATGTTTTGAATGGTTTAATCAGTTGTTCAAAGACTATATGTAGTGTTAAAGTATATTTCATTAGATTGTCTTTGTGAGGTAAGTTTCTTAATTATATTCATATTTTCAGTTTGAACATTTGTAACATTCTGAATGTCATGGCAATGGGTTTTATTTGGAAATGTTGTGATATGTTATATATAAAACAATACCCTGTATAGACAAGAATGTTACGTGTTTCCATTTTGTTGTTGTTGCTGTAAGAAGGTTTACATGTATTCATTATAACTCTGCCAAGATTTGAAAGTAATGTGATACTACCTACCAGTTATCTGTATCTGGGTATGATTTTACTTATTCTGTTTCATGGTTTTATAAAATGACTGAAATTTGAGCTCTTTTCTTCAGTACATTGTTTTCATTAACATATACGCATAAACACACACATCTGTGTAGATTTCTTTTTTTTTTAAGGGGTTGCTTGAGGCAAATTTGAAATTAAACTTAAGATTGGTATGTATTCTTATTTTATAGCAGGTATATTTTAAAAATAAAATTTCCCGAAAATGTCTATTATAATGATTTAGATTCTCTTTTCAG
Seq C2 exon
GGCCCAGCACTAGAAGATTTCAGTCATCTGCCACCAGAACAGAGACGTAAAAAACTACAGCAGCGCATTGATGAACTTAACAGAGAACTACAGAAAGAATCAGACCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137942-FNBP1L:NM_001164473:11
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.954
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127872=EcsC=FE(27.5=100),PF103924=COG5=PU(36.8=86.5),PF143891=Lzipper-MIP1=PU(34.1=78.4),PF154561=Uds1=PU(36.8=86.5),PF0218511=HR1=PU(25.0=43.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)