GgaINT0035271 @ galGal4
Intron Retention
Gene
ENSGALG00000005850 | FNBP1L
Description
formin binding protein 1-like [Source:HGNC Symbol;Acc:HGNC:20851]
Coordinates
chr8:12817870-12819902:-
Coord C1 exon
chr8:12819888-12819902
Coord A exon
chr8:12817980-12819887
Coord C2 exon
chr8:12817870-12817979
Length
1908 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
3' ss Seq
AATAGTATCTATATTTTCAGGGC
3' ss Score
6.12
Exon sequences
Seq C1 exon
TGGTCGGTGAAGATG
Seq A exon
GTAAGCCCGTGTGCTGATCTGTCTGCTGTACTTCTGCTAAGATAGCATGAAAGTAATCTTCTGAAAGTGTTTCCATATCATAACTGCTTTAAGTCAGGCACTGGAATACATCTTCAGACTTTCCACTCTCATACACGATCATGTTCTTAATCATCCACATGCTTAATGTGAAACAATGAGACTTGTGATCTGTCTGCAATTTAATCTGTGATTTTGGAATTTTAAGGTTGACCAGCATTCATCAGTTGGTGATGACAGAAATACTTAGTGCTTTCTCTGTATCAGAAATGATTTTTAAAGCAGCATAAAATAAGTATACAAAAAGATTGCAAGACTTGTTCAAAAGAGGAATAGTGAATATTGTAAAACTCATGCACTTGAATTTAACCTGACATTTACAGTGGAGACAATCCTTTATGTTTAGGAGTATTAGAAACCTTCTATATTAAATGAAAAAATTCCCCTTAATCAATATTGTAACTTTGCAGAGTAAGTCAGTAAAATTCACATGAATAACTGTGTTCCTCTGAATATTACTCACTGCTTTTAATTAACTGACCTGCAAGGAACAATGATACCAAGGACATGATTATCGTAATTATTATTATGCTTCTACGTGTGTAGAAGCACCTGAAAGCCTTTTTGTTTTCTCAGAAAGAAACCCTCTTGCTTTGTTTTTGAAACACCATACTTTGATTTCTCTCTTTTTTTTAATGGTGTCATGTGTTTCCATCTTAAAAAGTAGAGAGATTAGGATTTTAGACGTGGAGAAGAACCAAGGAGTTGAGGGGCAAGAAGATGATTAAGATGGGGGGATCTAGAAACTTGGAATTGCATCTGAACCTAAGGTTGCCTGTGTCAAAATCTTGACAATAATGCTTATCAGGCTGCTGCTTGTCAAAAGAAATGCTGTCCAGCTCATTTTACATCTGTGGATGGTTTCTGTAAAGGCAAGTAGGTTTTCTTGACCTAAAGATGCTTGTAAGAAAGTAATGCAACTTCGTTATCAGTATGTGTACTGTATTTCCTTCTTAAAAAGCAGGATAGGTGTCTGTCACTCAAGGAGGAAAGTTGGCACATCAAATTCACGTGATAGGTTAAAATCTCCTCCCATGCTTTATTACATGCCAGTACTACCATACTATTTATAATCTTAGCACAAGCTTGCAATCAAACCTTCACAAATTTGGGCTCATAACAATACTTGGCCTTAAGTTTTTTGGGTTTTTTTTCAATTGTTTGAGAATGAGCAGGTTTTCGAATATATGAGCAAGTTTTGTTTGATTGTATAAATTCTATGCTCTGTGAATTGGTTCTACTCTAGGTAAAAAGTGTCAGAACTCTGTAAGTCTAATTGAGATTCTTCTAATGTGTTTTCTAGCAAGATTGATGAACTTCTGAATGAGAACTATATTAATATTTTGGAACAAAGGTCTAAATGACAGTGTTCTTCTTTTGACAGCATCCAAGTAGCCACTGAAAACACAGTCCATGGAAAGATTAAATTATATACATGCTATTACTATATACGCATCTTACATTTTTCTTCTGACTGAAATAAATGCTCAGTAAGTAATGCTGGTTTTACTAAATCTGCACTGAGGCAGTGGCTAAAATAGGGAGTTTCATGGCTCAGTTTTTTAGACTAAATTAGTGTTTAGTCTGCAAATCATTAATTGCAACACCAAGCCAGCTGTTACAGGAGGTAGAAAGAACCTTGAATGAGTGACTACAGGATAGCACTAAAAACATGCATTAATTCTGTGGTGGTCTTTTGAAGAGCTGTGTATCAAGTAGAATTCTAAGAAGGTCCATCTTGCTTCCAGTGAACACCGTTCATGTTGTGGGTATGTCAGTTCAACTGTCTAGATGTGTGTGTTACTTGTGTAATAGTATCTATATTTTCAG
Seq C2 exon
GGCCCTGCACTGGAAGACTTCAGCCACCTTCCTCCAGAACAAAGACGCAAGAAACTTCAGCAGAGAATTGATGAACTCAACAGAGAACTACAGAAGGAAACTGACCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005850:ENSGALT00000009401:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.946
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF103924=COG5=PU(35.9=89.2),PF154561=Uds1=PU(35.2=86.5),PF143891=Lzipper-MIP1=PU(33.3=78.4),PF0218511=HR1=PU(25.8=43.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]