HsaINT0076827 @ hg38
Intron Retention
Gene
ENSG00000180448 | ARHGAP45
Description
Rho GTPase activating protein 45 [Source:HGNC Symbol;Acc:HGNC:17102]
Coordinates
chr19:1079703-1080118:+
Coord C1 exon
chr19:1079703-1079840
Coord A exon
chr19:1079841-1079927
Coord C2 exon
chr19:1079928-1080118
Length
87 bp
Sequences
Splice sites
5' ss Seq
TCGGTGCGT
5' ss Score
8.67
3' ss Seq
CTCTCCGGTGCCGCCCGCAGGCC
3' ss Score
10.74
Exon sequences
Seq C1 exon
GCGGAGGAAGCTATGGCCACCTACCGCACCTGCGTGGCCGACGCGAAGACGCAGAAGCAGGAGCTGGAGGATACCAAGGTGACGGCGCTGCGGCAGATCCAGGAGGTCATCCGGCAGAGCGACCAAACCATCAAGTCG
Seq A exon
GTGCGTGGGGTGCTCCGGCCGCCCGGGCGGGGATGGTGGACCGGGCGGCCTCCTCCTGACCCCTCCGCTCTCCGGTGCCGCCCGCAG
Seq C2 exon
GCCACGATCTCCTACTACCAGATGATGCATATGCAGACGGCGCCGCTGCCCGTGCACTTCCAGATGCTGTGTGAGAGCAGCAAGCTGTATGACCCAGGCCAGCAGTACGCCTCCCACGTGCGCCAGCTGCAGCGGGACCAGGAGCCCGATGTGCACTACGACTTTGAGCCCCACGTCTCCGCCAACGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000180448:ENST00000539243:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.428 A=NA C2=0.484
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCTGGAGGATACCAAGGT
R:
CCTGGGTCATACAGCTTGCTG
Band lengths:
177-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development