RnoINT0020256 @ rn6
Intron Retention
Gene
ENSRNOG00000013220 | Arhgap45
Description
Rho GTPase activating protein 45 [Source:RGD Symbol;Acc:1308662]
Coordinates
chr7:12732180-12732988:-
Coord C1 exon
chr7:12732851-12732988
Coord A exon
chr7:12732371-12732850
Coord C2 exon
chr7:12732180-12732370
Length
480 bp
Sequences
Splice sites
5' ss Seq
TCGGTGTGT
5' ss Score
5.93
3' ss Seq
GACTAGCTCGTCTCCTATAGGCC
3' ss Score
6.33
Exon sequences
Seq C1 exon
GCCGAGGAGGCCATGGCCACTTACCGCACATGCGTGGCAGATGCAAAGACACAGAAGCAAGAGCTGGAGGACACAAAGGTGACTGCGCTGCGACAGATCCAGGAGGTCATCAGACAGAGTGATCAGACCATTAAGTCG
Seq A exon
GTGTGTGGAGGGCTCTGGGTGGGCTGAACTTGAAGAGGTGGGGGCAGTGAGCGGAATTTGGTGTATTTGCTAAAGGGGTGGGGCATAATGTGTGGCGGGCACAGTCAGGGTTTGGTATGGCACAGTGATTCTAGTGGCATAGAACGGTGGGTAGGTGGAGTGGGGCAGGAAGGACCCTTCCACAGCAGCAGAGGTCACAGGGAGGGACTGATCTGGTCTGTTACAAGCTGGATAATGCATCAGGGGTCCCAGCAAGGGTAGGGTGGCCACGGGAGAGTGTCCTGGGGCTGAAGGCTAAACAGGGCGAGCTGTGCAAGCCGCAGGGATTGAAGGAGCAGGGGTGGGGCTTTGGGCAGAACTAGGAGTGGAGAGTGATTAGGGCAGAACTATTGGGACAGGGTTCTGGACTGTGGGAGGGGCTTGTTGGTGTGGGCGTGGTTGAAGGCGTGACCCAGCCCTTGACTAGCTCGTCTCCTATAG
Seq C2 exon
GCCACCATCTCCTACTACCAGCTGATGCACATGCAGACAGCGCCGCTGCCTGTGAACTTCCAGATGCTGTGCGAGAGCAGCAAACTATATGACCCGGGCCAACAGTACGCATCTCACGTGCGTCAGCTGCAGCGAGGCGAGGAGCCGGATGTGCGCTACGACTTTGAGCCTTATGTCTCCACCAATGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013220:ENSRNOT00000060648:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.453
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGCCACTTACCGCACAT
R:
CAGGCATTGGTGGAGACATAAGG
Band lengths:
318-798
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]