MmuINT0078332 @ mm10
Intron Retention
Gene
ENSMUSG00000035697 | Arhgap45
Description
Rho GTPase activating protein 45 [Source:MGI Symbol;Acc:MGI:1917969]
Coordinates
chr10:80025409-80026346:+
Coord C1 exon
chr10:80025409-80025546
Coord A exon
chr10:80025547-80026155
Coord C2 exon
chr10:80026156-80026346
Length
609 bp
Sequences
Splice sites
5' ss Seq
TCGGTGTGT
5' ss Score
5.93
3' ss Seq
GACGAGCACATCTCCTCCAGGCC
3' ss Score
4.44
Exon sequences
Seq C1 exon
GCCGAGGAGGCCATGGCCACTTACCGCACATGCGTGGCAGACGCAAAGACACAGAAGCAGGAGCTGGAGGACACAAAGGTGACTGCGCTGCGGCAGATTCAGGAGGTCATCAGGCAGAGTGATCAGACCATTAAGTCG
Seq A exon
GTGTGTTATGGGCACTGGGTGGGCTGAACTTGGAGGGGTGGGGGCAATGAGCGGGATTTGGTGTATTTGCTAAATGGGCGGGGCATAATGTGGGCAGGGTTTGGTTTGGCACGGTGATTCTAGTGGCATAGAACAGTGGATAGATGGAGCGGGGCAGGGCAAAACCCTTTCACAGCAGCAGAGGTCACCGGGAGGGATTGGTCTGGTCTGTTACAAGCTGGATAATGCAGCAGGGTCCCAGCAAGGGTAGCGTGGCCACGGGAGGGTGTCCTGAAGCTGAAGGTGAACTGTGCAAGGGGCAGTGTTTGAAGGAGCAGTGATGGGACTTTGGGCAGAGTGCAGGGGCTGGGTGTTAGTTTTTTCAAAGTTGAAGGGTGTGGCTTAGTAGATGGGTTGGGGCAACAGGCAAAGTGCCACGAGACGGTCCTTGTCTAGTGTGAACTCTATGGGAGTAGAGGGTTTGGGCAGCAGACAGGAGGAGGGTCTGGTGGGTGCTATACAATGGGTGTGGTTTGGGATGGAGTGCTATAGGGGCTGGACTGTGGGAGGGACTTGATGTGGGCGTGGCTGTGGGCGTGGTCTAGCCCTTGACGAGCACATCTCCTCCAG
Seq C2 exon
GCCACCATCTCCTACTACCAGCTGATGCACATGCAGACAGCACCGCTGCCCGTGAACTTCCAGATGCTGTGCGAGAGCAGCAAACTATATGACCCGGGCCAACAGTACGCATCTCACGTGCGTCAGCTGCAGAGAGGCGAGGAGCCGGACGTGCGCTACGACTTTGAGCCTTATGTCTCTAACAACTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035697:ENSMUST00000099501:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.469
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGCCACTTACCGCACAT
R:
CAGGAGTTGTTAGAGACATAAGGCT
Band lengths:
318-927
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types