HsaINT0083174 @ hg19
Intron Retention
Gene
ENSG00000150995 | ITPR1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:HGNC Symbol;Acc:6180]
Coordinates
chr3:4693807-4695570:+
Coord C1 exon
chr3:4693807-4693902
Coord A exon
chr3:4693903-4695525
Coord C2 exon
chr3:4695526-4695570
Length
1623 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
TAATGATTCTTTTTCATCAGGTA
3' ss Score
7.24
Exon sequences
Seq C1 exon
GTGGTCCAGCATGACCCATGTCGGGGCGGAGCAGGGTATTGGAACAGCCTTTTCCGTTTCAAGCATCTGGCCACGGGGCATTACTTGGCAGCAGAG
Seq A exon
GTAAGTAGCAGCTCCTGTGGTTTTCTCTTTCAAGGCTGACGCACCTCACCGCCTTTCCTCATTCGCCTGTAGCCGTCGTGTTGTAAAAGGCTTAGGGAAATACACTCAGTCACCTTGCTTTTCCTCCTGTTTTTCTGTTTCCTTCTGATTCATTTTCCTAGAAGACTCAAAAATGATTACCACATTTTGGTAGGTGACAGGGATGCTGATCAAGATGTGGGGAGAAAGTAAGTTAGAAGATCATGCCGATCTAGGTTTTCGGTATTATTTTCCATTTCGCTTTTATATACGACCCTCCCCACGTCTTGTCTACCAGCCCCACACCTAGCATGAGCGACTGAGGCTGCAGCAGAAACATGATATGTGGAACCGGAAGCACTAAGACGTATAAGGAATTAGATAATCTTATAAAGAAATTTGGCTACTCAGAGCATTAGTGGAATAGACAGTGGCTTATCTTTTACTTGTAGGAATGTCAAAAATCACGGAAATTAACTTTACCTTAAATGTCTGTGAAGGGGCCAGGCACAGTGGCTCACACCTATAATCCCAGCACTTTGGGAGGCTGAGGAGTTCAATATCAGCCTGGCCAAAATGGTGAAACCCCGTCTCTACAAAAATTAGCCAGGTGTGGTGGTGCACGCCTGTAGTCCCAGCTACTTGGGAGGGTGAAGCAGGAGAATCGCTTGAACACGGGAGGCAGAGGTTGCAGTGACCCGAGATCGCACCACTGCAGTCCAGCTTGGGTGACAGAATGAGACTCTGTCTCAAAAAAAATGTCTGTGAAGAGTTTTTGAGGAGACGAAAGACTCAATGCTGAAGGACAGGAGGAATTTACCTTTTAATTTTTGTATCAAATGAAGCAGCCATCCTACTGTGTGACATGTCGAGCTTTACTCTGATCTGCTGGGAGATGTATGATGCATATTTCTATCAGATTCTAGTCGTGCATCAAAAGACCCCCACTGTTGTCTGGGACCACCCATGAGACTACTGAGAGATTTCCAAGGTGATGGTGGGTGTCAGCACTGCTCCTGTGCCTGACCCGAGGAAGGCTGGCTCTTAAGTGTGCTCAGCCCCCCACGGTGCCTAATACATGAAGTGATGATTTTGATATATTTAAGAACTGAAGATCAAGAACTCCAAGTTCAAATTTGAGATAAAGCCATAGGGAATTACAGACCCAGCTAATCAGCTGTGAGAGATGATTTATGTGGTTTCCTGAAGACTAATGGTGGTGGCATTATCTGTCATGTTTTGAAGCTAATGTAGCTCTTGCTGGAGGCCTACATTTTTTATTTTTAGCTAAAAATAGGATTATCAGTGACTGTGTATTGATCTTTTATTCATCTCAGGCTTTTAACTATTGCTTTGCCAGTGAATTCATTGTCTTCCTCTGTCTATACTTGAGAGCCGTCTCTTGGTGACTGGTGGATGTTCCATGTGTGCTGTACCCATGTGACCTGTATCATTGTCGTGGCATGCTGGTTTTGTGAACAGAGGGAATGGACAAGTTCTTAGCTGTTCAAGGATGTTTGCAGGCCTTGAAGTCTCCTGCAAGTGGGGCCCAGTCCTTAAGAAAGCAATGGATGTTTTAATTTCCTAATGATTCTTTTTCATCAG
Seq C2 exon
GTAGACCCTGACTTTGAGGAAGAATGCCTGGAGTTTCAGCCCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000150995-ITPR1:NM_001099952:11
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.133
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(16.6=100)
A:
NA
C2:
PF0281514=MIR=FE(13.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)