GgaINT0021948 @ galGal3
Intron Retention
Gene
ENSGALG00000008294 | Q9DEX2_CHICK
Description
NA
Coordinates
chr12:19075217-19076718:+
Coord C1 exon
chr12:19075217-19075312
Coord A exon
chr12:19075313-19076673
Coord C2 exon
chr12:19076674-19076718
Length
1361 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
CTGTGATTCTGTTTCATCAGGTA
3' ss Score
8.07
Exon sequences
Seq C1 exon
GTGGTACAGCATGATCCTTGTCGTGGCGGTGCAGGGTACTGGAACAGTCTGTTCAGGTTCAAACACCTTGCTACTGGACACTACTTAGCGGCAGAG
Seq A exon
GTAAGTGTTGGGGTTGTTTAGGAGCTCTGCCTTTCCTTCTCAGCATCCTATTCCTTTTATTCTTTCTGAAAATCTCTCATTTCTCACCCTAAAAAGATGAGGGAAGGAGAGTCGTGTTTGGGTCCTTTAGCATCATTACTAAGGTAGATGGTAGACATGGAAATCAGTTAAAGAGACTTGGATGAATACTGCAGTAAGGGGATAGTCTTGAGCATATTGCACTTTCTGTATGAATTCTAAAGGCAATTACTCTTGTACAAAGGGTAGGTGCTAAATACTGGTATACAGTTTTGTGGGTAGTGAGAATGAAGTTGAATGAGTATTTGAATAGCTCTTAAATGGTGGAGCCCCTTTGAGGGAAAATGAGTTCCATCAACTAGTGTTAGCTTCTGTCAAGTCATCAATTTCCTAATAGGAGTGAAAGACTGACTGTAAGATGGAAATGCAGTTAGGCTTCAGAGCAGGCTGGTAAGAACTGCAGATAATGCATAAGCATAAAGTAATGTCTGATTTGCTCACCATAGTTGGTATCTCTCCTTTCCACCCTGAAGTAGAATTTCAGGATGTCTTATAAAATGAAATAAAAAAAAATGCCAAAGCATTATAATTTTGTGAGTTTTGCTGCTTAACGCTTGTGAATGTTCATTAAAACTAAGTACTTCAGAGCAGAGATATATCAATATGTCTGTACACAAACCTCTGTAAATAAAGGCTGTCCTGGATGTAAGAGTGCAGAGCAGGGCAGAAAGGCTGTCTTAGCTCATGTTGTTGACATGCGAGTTTCAGTGGGAAAGGTCTGGATTAAATATCCTATTTTATACTCCTCTAACAAGTAGATTGGAAAAGCAGCAAGAGTTTGTCACGTGTACATGAGCAAATCCTTTCCAATTGTAGTCCAATATTGAGCTTTTTCAGTACATTTTGGGTTTGGTAATCAGCCAAAATGAAAACAGCCTTACATCATGCATAATAAAGCAGAGGAGATTGCTCACCTGATCCATGGTTAGAGTAGTGTTTGTTCTAAAAGTACTGTGCCAAATCAGTGGTTTCTATTTGGAGATTCCATTTGAGATTTAAATAGCAAAAATGGAACTTGGTAACCTCTATCTGTCTTGCTCCTCCAGTAACTCAACTGAGCACGTTTCATCTGTCTGCACATGTGCAAAGGACAGTCTAATCTGTGGACAGGCAGTCGCCCAATTAGAAATAAATCCCTTTGTGTAGTGTATTTGTTCTGCATGCCCGGTAGCACCGTAGCAGTAGAGCTCATCTTTTACAAAGCAAATTTAGATGGTGCTGAGGTTATTTCTCACTTGTAGCTCTGTTAGAGTTTTGACATGCCTGTGATTCTGTTTCATCAG
Seq C2 exon
GTAAACCCTGACTATGAGGAAGATGACCAGGAGTGTCAATCCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294:ENSGALT00000013505:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.800
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(15.3=100)
A:
NA
C2:
PF0281514=MIR=FE(6.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]