RnoINT0076623 @ rn6
Intron Retention
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140396682-140398464:+
Coord C1 exon
chr4:140396682-140396777
Coord A exon
chr4:140396778-140398419
Coord C2 exon
chr4:140398420-140398464
Length
1642 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
TAATGATTCTTTTTCATCAGGTA
3' ss Score
7.24
Exon sequences
Seq C1 exon
GTAGTCCAGCATGACCCATGTCGGGGTGGAGCTGGGTACTGGAATAGCCTCTTCCGGTTCAAGCACCTGGCTACAGGGCATTACTTGGCAGCAGAG
Seq A exon
GTAAGTAGGTGCACATGGCTTTCTCTTGGGAAGTGAGCTCACCATGATCGTTATTCTTCACTCACTTGTAGCAGCTGGATGCCTGGAAGCTCAAGGGAGCACTCAGCCACGGGCTTCTCCATCCACCTTTCTATGTTCTTCTCTCTCATTTCTCTAGAAAAGGGAAGTTACAAATGACTGGCACACTGTGGGACTTGACAGGGCTCCTGACCAAGCTATAGGGAGAAGGAAGGTAGAACATGATGCTTCTGTAGTTTTGTCGGGCAGCTCCCCTGCATTGCTTATATGCCACTGTGCTTATAGTCATCTGACAACCCCACGACTAACACAGGGGCCTGATACTTTCTGCACTACACACATTGTAAGTAAAATCAGAAGTGTTGAAATGCATGGAGAACTACAGCATTTCATAGAGAAATCTGATTCATCGGGGCTTTACAAGGAGACATAGGTGTCATCAATCTTGTAAGAATCACAAATCACATTAACAAATTATTTTGAGACAAGGTATTACTAGATAGCTTGACTGGCCTGGAACTCACAGTGATTGATTTATCCCCTGCCCCACCCCCACTTGCTGGGATTAAAGGCATATGCTGCTACATACATACGTACATAACACACACACACACACACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTACATACCCACACACATGTGCTGGGCCCTCAAGTTAACTTTTTGAGTCAGGGCCTTATTCTGCAGCCCAGACTGACTTTCATTTCTCTATCCTTCTGCCTCAGTGCTTTATCTACTGTATTTAGCTTATGAAAACTTTTTGAGCCAAGACTAGGTGTTGAAGAATGAGAGGAATTTCTATTTTAATTTGTATTAAATTAAGGGACATCCTGCTGTGTCACTGCTGTTGAGTTTTACTCTGACCTGATGGAAGATGTCCACCTAATCATAGTCACATTCTAGTCGTACATCAAAAGACTCCTCTGTTGTCTGGCACTACTGGCTCAGGATTTCTAAGGATTTGGGTAGAAATCAGTCCTGCTTCTGCCACAGGCCCTAGGAATTTGGATTCTAAATGTGTAAACCCCATGGAGTGTCTTGATACTTGGATGAACTGATGATTTTGAAGTACCTGAAGAGCCAAACACGAAGAAGTCCAGGTTGACATTTAAAATGGAGTCTTAGGAGAGGAAGAGACCCATCTAAGCAACTTTGAAAAACCCTTGATTATGAGTTTAAAGGTTAAAGGTGGCTATCTTTCCTGTTATGTTTTAAGGTAAATGTAGCTCCTTCTAGGTTTCCTAAGCAGGGCTATCAATGACTGTGTTGACATTATCTTTATCTTAGGCCTTTACTGTTGCTTTCCTAGTGAATTTGTTGTGTTTTCCTTGTCTATACTCAGAGCTGAACTGTCTACTAGTGATTGGTGGATTGTTCTGTGTGTACTGTAATGTGACTTGTGTTGTTGTGGCATGCTGGTTCTGTGAATAGGGGAAGGGACAAGTTCTTAGCTGTTCAAGGACGGCCACGGGTATTGATGCCTCCTGCAGATGGGTCCTGGTCCTTTAGAAAGAAATGGATGTTTTAATTTCCTAATGATTCTTTTTCATCAG
Seq C2 exon
GTAGACCCTGACTTTGAGGAAGAATGCCTGGAGTTTCAGCCCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104:ENSRNOT00000040255:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.133
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(15.3=100)
A:
NA
C2:
PF0281514=MIR=FE(6.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]