MmuINT0084418 @ mm9
Intron Retention
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108313604-108315337:+
Coord C1 exon
chr6:108313604-108313699
Coord A exon
chr6:108313700-108315292
Coord C2 exon
chr6:108315293-108315337
Length
1593 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
TAATGATTCTTTTTCATCAGGTA
3' ss Score
7.24
Exon sequences
Seq C1 exon
GTAGTCCAGCACGACCCATGTCGGGGTGGAGCTGGGTACTGGAATAGCCTCTTCCGGTTCAAGCACCTGGCTACAGGGCATTACTTGGCTGCAGAG
Seq A exon
GTAAGTAGCAGCACATGGTTTTCTCTTGGGAAGTGAGTTCACTATGATTATTGTTTTTCACTCGCCTGTAGCAGCTGGACGCCTGGAGGTTCAAGGGAGCCCTCAGCCACCGGGCTTCCTCGTCTGCCCTTCTATGTTCTTCTTTCTCATTTCTCTAGAAAAGAAAAGTTACAAATGACTGGCATACTGTGGGACTTGGCAGGGCTCCTGAGCAAGATGTAAGGAGAAGGAAGTTAGAGTGTAATGCTATTGTAGGTTTGTAGGGCAGTTCACCTGCTTTGCTCTTGTAAGCCACTTTGCTTATAGTCATCTGAAAACCCCACACCTAACACATGTCCTGGTCACATGGTAAATAAAATCAGAAGCACTGAAGCGCATGGAGAACTAGAGCATTTCATAGAGAAATCGGATTCTTCGGAGTGTTATGGGGAGACATAGGTGCCATCAGTCTTGTAAGAACATCACGAATCAAATAACAAATTATTTTGAGAAAAGGTCTCACTATATAGCTCTGGCTGGCCTGGAACTCACAGCAATTCACTTAACCTCCCCCCAAGTGCTGGGATTAAAGGCATGTGCCACTACACAGGTACGTACTTACATACATACATACATACATACATACATACATACATACATACATACATACATACTTACATACCCCTACACACACATATGCTAAGCACCACTCAAGTTAACTTTTTGAGTCAGGGCCTCACTTTGCAGCCCAGGCTGGCTTTCAATTCTCTATCCTCCTGCCTCAGCCTTTTATCTACTGTATTTAGCTTATGAAAGCTTTTTGAGAAAAGGAAAGACTCAGTGTCGAAGGATGCGTGGAATTTCCACTTCAGTTTCTGTATTTCGTTAAGGGACATCCTGCAGCGTAACTGATGTGGAGTTTTCCTCTGATCTGAGGGAAGATGTCCGTCCGATCATTTTCACATTCTAGTAGTCCAGCCAAAGACCCCACGGGTGTCTGGCACCACTGGCTCAGAATTTGTAAGGATCTGTGTCAGGATCAGTCCTGCTTCTGTTGCCACGGGCCCTAGGAATTTGGATTCTAAATGTGTAAACTACCTGGAGTGTCTTGATACTTGGATGAACTGATGATTTTGAAATACTGAAGACCCAAACATGAAGAAGTCCAAGTTGACATTTAAGATGGAATCTTTAGGAGGAAGAGAGCCATCTAAGCAGCTTTGAAAAACCTTTGGTTATGAGGTTAAAGATTAAGTTTGTTTGTCTTTCCTGCTATGTTTTAAGGTAAATGTAGAGGTGTCCTAAGCAGGGTAATCAATGACTGTGTGTTGACATTATCTTAGGTCTCTACTGTTGCTTTCCTAGTGAATTTGTTGTGTTTTCCCTGTCTATTCTCAGAGCTGAACTGTCTACTAGTGATTGGTGGATTGTTGTGTGTGTACTGTAACTGTGACTTGTGTCGTTGTTGTGGCATGCTGGTTCTGTAAATAGGGGAAAGGGACGAGTTCTTAGCCGTTCAAGGATGACTGCAGGTATTGACGTCTCCTGCAGATGGGTCCCGGTCCTTGAGAAAGAAATGGATGTTTTAATTTCCTAATGATTCTTTTTCATCAG
Seq C2 exon
GTAGACCCTGACTTTGAGGAAGAATGCCTGGAGTTTCAGCCCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102-Itpr1:NM_010585:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.133
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(15.3=100)
A:
NA
C2:
PF0281514=MIR=FE(6.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: