BtaINT0078495 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020455 | ITPR1
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 1 (ITPR1), mRNA. [Source:RefSeq mRNA;Acc:NM_174841]
Coordinates
chr22:21814460-21816568:-
Coord C1 exon
chr22:21816473-21816568
Coord A exon
chr22:21814505-21816472
Coord C2 exon
chr22:21814460-21814504
Length
1968 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
TAATGATTCTTTTTCATCAGGTA
3' ss Score
7.24
Exon sequences
Seq C1 exon
GTGGTCCAACATGACCCATGTCGGGGAGGAGCAGGGTACTGGAACAGCCTCTTCCGTTTCAAGCATCTTGCTACCGGGCATTACTTAGCAGCAGAG
Seq A exon
GTAAGTGGCAGCCCTGTGATTTTTCTCTTTCCATGGTAATGCACTTCTCTTTCCTCACTTACCTGTAGCCGTTGGGTAGTTAGAGGCTTAGGGTGCTGCTCTGTTACCTAGCTTTTCCTTCTGTTTCTCTGTTTCCTTCCACCTCGTTTCCCTACTTATGAACAAGAAGCAAAAATAATGAACACATTTTAACATTTGACAGGGATTCTGATCAAGATGTGGGGAGAAAGTCAGTTAGAAAACAATGCTGTCATGAGAATGTCATGTCCAGCATGCTGACTATAGTTAATAATACTGTATTGTTTATATTTGGCTCTTGAATGATGTGGATTTGAACTGTACAGGTCCAGTTACCTGTGGTTATGGCAGCCCATTCCAGTATTGCCTGGAAAATTCCGTGGACAGAGGAGCCTGGTGGGCTATGGTCCATGGAGTCACAAAGAGTCGGACATGACTGACCGACTGAGCACATTCTTCAATAGTAAATGCTGCATAACTAAACCAGTCTGTGGCTGGTAGAATTTGAGAATGCAGAAGAACTGCAGATGTGGAGGAATCGCAAATTTGGAGAAAGTGAAAATGTTAATCATTCAGTTGAGTCCAATTCTTTGCAACACCGTGGTCTGTTGATGGAAATCTCCAGGCAAGAATACTGGAGTGGGTTGCCATTTTCATCTCCAGGGGATCTGCCTGACCCAGGGATTGAAGCCGGGTCTCCTGCATTGCAGGCAGATTCTTTACTGTCTGAGCTACCAAATTTGGAGGGCCAACTATAAATTATATACCCATTAACTTCAGCCTTGTTCAAGGGTGAGATGTATTTGAAGGTGGCTAAGAGAATAGATCTTAAAAAAAAAAAAATCACACTAATCTGGGCTTTAGGATTATCTTTCAATTTTGCTCTTGCATACTACTCTCCCCACATCTTATTGTTTACCAACCCCAATCCTAAGGTAAATGACCAAGACTCGGCTGTAGTGCAACATGGTATGTAAAGCTAGACGCATTAAAACACATAAAGAATTACTTGACTTTATAGAGCTTGCTTACTCACAGGATCAGTGGATTCGCCAAGATCCTTTACTTACAGAAATGTAAAACATCAAGGAAGTGTGTTTTAAATGCCCATGAAGGATATTTGAGGAAAGCAAGACTCAGTGCTGAAGCATGGGAGGAAATTTCCTTTTAATTTTTGTATTAAATTAAGGAGTCATCTTACTGTGTGACAGCTGTTGCACTTTACTCTGATCTGCTGGAAGATGTACGATGCATATTCATACCAAATTCTAGCCGTACATCAAAAGACACCTGCTGTTGGCTGGCACCACTGGTGAGACTGCTCAGAGATTTGCAAGGTGATGTGTGGGCATCAGACTGTGGCAGCTGACCTCAATCTAAATGTGCCAGACCCTCTGGGATGCCTGATACTTGTGTGAACCGATGATTTTTGATCTACTGAAGAGCCGAAGATCAAGACTAAGTTGAAATTTATAATGGAGCCATAGAAAGTGGGCCCAGCTAACCAGCTCTGAGAAATGTTGATGACATGGTTTGCCAGAGGTCACTGGTTGTTGCATTATCTGTTATGTTCTGGGGTGAATGTAACTCTTGCTGAAAGCCAGACCATTTTTTTAAAATTTCTAACTTGAAATAAGCAGGATTATCAATGACTGGATACTGATCTTTTATTTATTTCAGGCTTTTAACTGTTGCTTTGCTAGTGGATTCTCTGTGTTCCTCTGTCTACACTTGAGAGCCATCTGTCAGTTACCGGTAGACTTGTTCCGTGTGTGTTGTACTCATGTAACGTGTGTTGTTGTTGTGGCATGCTGGTTTCGTGAACAGAGGGAAGGGACAGGTTCTTAGCTGTCCAAAGATGTTCGCAGGCCTTGATGTCTCCTGCAGGCGGGGCCGAGTCCTTGAGAAAGCAATGGATGTTTTAATTTCCTAATGATTCTTTTTCATCAG
Seq C2 exon
GTAGACCCTGACTTTGAGGAAGAATGCCTGGAGTTTCAGCCCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020455:ENSBTAT00000054653:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.133
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(15.3=100)
A:
NA
C2:
PF0281514=MIR=FE(6.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]