Special

GgaINT0021948 @ galGal4

Intron Retention

Gene
Description
inositol 1,4,5-triphosphate receptor, type 1 [Source:RefSeq peptide;Acc:NP_001167530]
Coordinates
chr12:18431581-18433082:+
Coord C1 exon
chr12:18431581-18431676
Coord A exon
chr12:18431677-18433037
Coord C2 exon
chr12:18433038-18433082
Length
1361 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
CTGTGATTCTGTTTCATCAGGTA
3' ss Score
8.07
Exon sequences
Seq C1 exon
GTGGTACAGCATGATCCTTGTCGTGGCGGTGCAGGGTACTGGAACAGTCTGTTCAGGTTCAAACACCTTGCTACTGGACACTACTTAGCGGCAGAG
Seq A exon
GTAAGTGTTGGGGTTGTTTAGGAGCTCTGCCTTTCCTTCTCAGCATCCTATTCCTTTTATTCTTTCTGAAAATCTCTCATTTCTCACCCTAAAAAGATGAGGGAAGGAGAGTCGTGTTTGGGTCCTTTAGCATCATTACTAAGGTAGATGGTAGACATGGAAATCAGTTAAAGAGACTTGGATGAATACTGCAGTAAGGGGATAGTCTTGAGCATATTGCACTTTCTGTATGAATTCTAAAGGCAATTACTCTTGTACAAAGGGTAGGTGCTAAATACTGGTATACAGTTTTGTGGGTAGTGAGAATGAAGTTGAATGAGTATTTGAATAGCTCTTAAATGGTGGAGCCCCTTTGAGGGAAAATGAGTTCCATCAACTAGTGTTAGCTTCTGTCAAGTCATCAATTTCCTAATAGGAGTGAAAGACTGACTGTAAGATGGAAATGCAGTTAGGCTTCAGAGCAGGCTGGTAAGAACTGCAGATAATGCATAAGCATAAAGTAATGTCTGATTTGCTCACCATAGTTGGTATCTCTCCTTTCCACCCTGAAGTAGAATTTCAGGATGTCTTATAAAATGAAATAAAAAAAAATGCCAAAGCATTATAATTTTGTGAGTTTTGCTGCTTAACGCTTGTGAATGTTCATTAAAACTAAGTACTTCAGAGCAGAGATATATCAATATGTCTGTACACAAACCTCTGTAAATAAAGGCTGTCCTGGATGTAAGAGTGCAGAGCAGGGCAGAAAGGCTGTCTTAGCTCATGTTGTTGACATGCGAGTTTCAGTGGGAAAGGTCTGGATTAAATATCCTATTTTATACTCCTCTAACAAGTAGATTGGAAAAGCAGCAAGAGTTTGTCACGTGTACATGAGCAAATCCTTTCCAATTGTAGTCCAATATTGAGCTTTTTCAGTACATTTTGGGTTTGGTAATCAGCCAAAATGAAAACAGCCTTACATCATGCATAATAAAGCAGAGGAGATTGCTCACCTGATCCATGGTTAGAGTAGTGTTTGTTCTAAAAGTACTGTGCCAAATCAGTGGTTTCTATTTGGAGATTCCATTTGAGATTTAAATAGCAAAAATGGAACTTGGTAACCTCTATCTGTCTTGCTCCTCCAGTAACTCAACTGAGCACGTTTCATCTGTCTGCACATGTGCAAAGGACAGTCTAATCTGTGGACAGGCAGTCGCCCAATTAGAAATAAATCCCTTTGTGTAGTGTATTTGTTCTGCATGCCCGGTAGCACCGTAGCAGTAGAGCTCATCTTTTACAAAGCAAATTTAGATGGTGCTGAGGTTATTTCTCACTTGTAGCTCTGTTAGAGTTTTGACATGCCTGTGATTCTGTTTCATCAG
Seq C2 exon
GTAAACCCTGACTATGAGGAAGATGACCAGGAGTGTCAATCCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294:ENSGALT00000013506:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.800
Domain overlap (PFAM):

C1:
PF0281514=MIR=FE(15.3=100)
A:
NA
C2:
PF0281514=MIR=FE(6.9=100)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]