HsaINT0083183 @ hg38
Intron Retention
Gene
ENSG00000150995 | ITPR1
Description
inositol 1,4,5-trisphosphate receptor type 1 [Source:HGNC Symbol;Acc:HGNC:6180]
Coordinates
chr3:4652123-4653886:+
Coord C1 exon
chr3:4652123-4652218
Coord A exon
chr3:4652219-4653841
Coord C2 exon
chr3:4653842-4653886
Length
1623 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
TAATGATTCTTTTTCATCAGGTA
3' ss Score
7.24
Exon sequences
Seq C1 exon
GTGGTCCAGCATGACCCATGTCGGGGCGGAGCAGGGTATTGGAACAGCCTTTTCCGTTTCAAGCATCTGGCCACGGGGCATTACTTGGCAGCAGAG
Seq A exon
GTAAGTAGCAGCTCCTGTGGTTTTCTCTTTCAAGGCTGACGCACCTCACCGCCTTTCCTCATTCGCCTGTAGCCGTCGTGTTGTAAAAGGCTTAGGGAAATACACTCAGTCACCTTGCTTTTCCTCCTGTTTTTCTGTTTCCTTCTGATTCATTTTCCTAGAAGACTCAAAAATGATTACCACATTTTGGTAGGTGACAGGGATGCTGATCAAGATGTGGGGAGAAAGTAAGTTAGAAGATCATGCCGATCTAGGTTTTCGGTATTATTTTCCATTTCGCTTTTATATACGACCCTCCCCACGTCTTGTCTACCAGCCCCACACCTAGCATGAGCGACTGAGGCTGCAGCAGAAACATGATATGTGGAACCGGAAGCACTAAGACGTATAAGGAATTAGATAATCTTATAAAGAAATTTGGCTACTCAGAGCATTAGTGGAATAGACAGTGGCTTATCTTTTACTTGTAGGAATGTCAAAAATCACGGAAATTAACTTTACCTTAAATGTCTGTGAAGGGGCCAGGCACAGTGGCTCACACCTATAATCCCAGCACTTTGGGAGGCTGAGGAGTTCAATATCAGCCTGGCCAAAATGGTGAAACCCCGTCTCTACAAAAATTAGCCAGGTGTGGTGGTGCACGCCTGTAGTCCCAGCTACTTGGGAGGGTGAAGCAGGAGAATCGCTTGAACACGGGAGGCAGAGGTTGCAGTGACCCGAGATCGCACCACTGCAGTCCAGCTTGGGTGACAGAATGAGACTCTGTCTCAAAAAAAATGTCTGTGAAGAGTTTTTGAGGAGACGAAAGACTCAATGCTGAAGGACAGGAGGAATTTACCTTTTAATTTTTGTATCAAATGAAGCAGCCATCCTACTGTGTGACATGTCGAGCTTTACTCTGATCTGCTGGGAGATGTATGATGCATATTTCTATCAGATTCTAGTCGTGCATCAAAAGACCCCCACTGTTGTCTGGGACCACCCATGAGACTACTGAGAGATTTCCAAGGTGATGGTGGGTGTCAGCACTGCTCCTGTGCCTGACCCGAGGAAGGCTGGCTCTTAAGTGTGCTCAGCCCCCCACGGTGCCTAATACATGAAGTGATGATTTTGATATATTTAAGAACTGAAGATCAAGAACTCCAAGTTCAAATTTGAGATAAAGCCATAGGGAATTACAGACCCAGCTAATCAGCTGTGAGAGATGATTTATGTGGTTTCCTGAAGACTAATGGTGGTGGCATTATCTGTCATGTTTTGAAGCTAATGTAGCTCTTGCTGGAGGCCTACATTTTTTATTTTTAGCTAAAAATAGGATTATCAGTGACTGTGTATTGATCTTTTATTCATCTCAGGCTTTTAACTATTGCTTTGCCAGTGAATTCATTGTCTTCCTCTGTCTATACTTGAGAGCCGTCTCTTGGTGACTGGTGGATGTTCCATGTGTGCTGTACCCATGTGACCTGTATCATTGTCGTGGCATGCTGGTTTTGTGAACAGAGGGAATGGACAAGTTCTTAGCTGTTCAAGGATGTTTGCAGGCCTTGAAGTCTCCTGCAAGTGGGGCCCAGTCCTTAAGAAAGCAATGGATGTTTTAATTTCCTAATGATTCTTTTTCATCAG
Seq C2 exon
GTAGACCCTGACTTTGAGGAAGAATGCCTGGAGTTTCAGCCCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000150995:ENST00000357086:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.104
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(16.6=100)
A:
NA
C2:
PF0281514=MIR=FE(11.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development