HsaINT0084373 @ hg19
Intron Retention
Gene
ENSG00000184611 | KCNH7
Description
potassium voltage-gated channel, subfamily H (eag-related), member 7 [Source:HGNC Symbol;Acc:18863]
Coordinates
chr2:163253250-163256951:-
Coord C1 exon
chr2:163256699-163256951
Coord A exon
chr2:163253456-163256698
Coord C2 exon
chr2:163253250-163253455
Length
3243 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TTTTCTTTATATTTTCTTAGGAA
3' ss Score
9.45
Exon sequences
Seq C1 exon
GTCCTAAAGGGTTTCCCAGAATGCTTACAAGCAGACATTTGTCTACATCTCAACCAGACATTGCTGCAAAACTGCAAAGCCTTTCGGGGGGCAAGTAAAGGTTGCCTTAGAGCTTTGGCAATGAAGTTCAAAACCACCCATGCACCTCCAGGAGACACCCTCGTTCACTGTGGGGATGTCCTCACTGCACTTTATTTCTTATCCAGAGGCTCCATTGAAATTCTCAAAGATGACATTGTGGTGGCTATTCTGG
Seq A exon
GTGAGTGTTTTAGAAGTGCATGGTGACAGATTCAGTTATTAGCTTGTAATGCATAGTTTAAAATGATTAGGAAAAAAAGACTGATGTATGTATTCATAAGAACAGTTTAAGATGGTGGGTAATTTGAAAGCTGCATTTAAAATTCAGTTCAAACCAAATTAACCTTTCAGAAAATATGTTTTCTTAACTGTCTCACTTTTTCTCCGAAGTGTAAATGCTTCGATGATTCTCTTCAGTTCTTGGCAGCTACCTAGACATTTGAGGCCAAATATAGGAAAATAGTAAGCATATTCTTTTTTTATGTTAGAAGATCTTAGCTTCATGCTTGATCCCTCAACACCTTAAAATAAAATATATGTGTTGTAGGAAATACTTGCTAGCATGTGCCAAAGCCCTGTCATGAACTGGGTTTATGTTTTGATGAATTTCATTTATTCATTGTGCATTTTTACCTGCCGCGTCGGATTAAATGGAATCATACAGTCCTTAACTAGGTAATTAATATAGACCTATAAACTTAACAACCAGTGATAGAAGTGATGAAGAGATTAAATTAGTCATAACTTCAACTGGTTTGGGTGCAAAAGAAAACACATGTTTAATCTGCCTCTTTAAAAATAAATTTAGGCCATGTACACACACTGGGGCCTGTCGTGAGGTGTGGAGAGAGGGGAGGGATAGCATTAGGAGATATACCTAATGTAAATGATGAGTTAATGGGTGCAGCACACCAACATGGCACACGTATACATATGTAACAAACCTGCACGTTGTGCACATGTACCCTAGAACTTAAAGTATAATAAAAAAATTTTAAAAACTTAAAAAAATAAAAATAATAAATAATAAAAATAAAAATAAATTTAGGCCATGTGAACTTGTAGTACTTCTTTAGAATATTAGGACACTGGGGAAGAGCAAGGAAACAGAGAAAAATGCAGTCAATTCTTCTTTTCTCCTACCACATAGCCGGTAGGTTTAAGCCTCACTCTCCCTATGATAACGCCTATCCTTAGTTTCTGTAAAAATTTGCATTTTTCTCCTGTGGATTATCCAGCTCCACTTAAATAATGGGCATGTAATTCAATGATTTTCTCTCACTTAGCTTTTGATGTTCACATATGATGGTTCTCTCCAACAGGACAGGGATGTTGTCTGTTTTCCCTGCTGCTGTGTAGAACCAGAGTATGGCATGGCACAGACTCAAATACATGAATAAAGATGCTCACATGATTTTCTTATATATTTTGATAATTTTATTATATTAGTTTTTTTTTACATTTCCCAAATTTGGTTTTCTAACCAATAAGCTGACAAAGAATAAACACATATTCTAAATCATTTTAAGGCCACACAATCAAGTTAGGTTTTCACTAAATTTGGCATAGACAGTTTGCCCTGCTATGTTGCCAGGGAAGGAGGATGCTTCATTGCATTTCTGATCTTCAAGTCAGCCAGTCCTAGCTTCTACAAGAAGGTAATAAGCTTTCTTGCTTTATCAAGTAGTAATTTTAGAGTGTTGCTAAGACATATCCATGGACTGGCTTGCTCCTGGCTCATTTACAGTCATGTTGGTAATTGAAATACAAAGCCCATGCTTAATTTAATTCAGGTCTTTTTTAAAAACAATAATATCTATACTGAGCTACCAAAACTATAAAGAATGTCAGGAAATTACCCTTTTCTGTCCCTACTTCCATATAAGTCAGCCCCTAAAATCCTTACAAATTATGATCATTTATCCTATTTTTGGAAGGCTGATACATATTTATTTAAACTGTGGTTAATGTATCCTTTCTAATGTCGATTTTTCTTACGTAGTTAAGATACAGTGTTTGATTTCTCACTATTGAATTCCTTTGTAAAACAAGAATATTATAGCATTTTTGACTAATTAGAACCTTATTACTTAAAAGTCTTTGATAGCTTCTACAGTGAGGTGTACAAGAACTTGTCTACCAAAATCTAAAATAATATACCCAAGGAGTTTTTTCTAAAAATGAAAAGAAGCTTCAGGATAGACACAGGAGAGTACTATTTTACATTGCCATTGATTATCTTTAGAAGTTACATAATCAAGTAATATATCAGTATGTATTAAGTATATATACCACAAGTACAGTTTTTAAGTACTTTGATAGTCAGAAACAGAAAAATCTAAGTGGCCATGACATTCAGGGAAATCACTGGAAAGAGATTAGATACTTAGATACACAGTATCAGGTGTGCAAGAACTTTGACTCTGGATGCATCTGGAATCAGGATGCATGGGATTTAGTTCTGGCTGTTCTCTCCCTCCCTCCACTTCATTCAACTAAGAAGGTGATGTTAGGCTAATCAGTTTATCTCTTTAATGCTCTTTCTGTATTCATAAAATGTGGATAATTATTAGTAATTCCTTCATGAAGTTATTTTAGGAACAAATTGAGGCAATGCACCTAAGCATTTGACACAGTGCCTGGCACCTACTAGTCCTCAATAAATATTTGTTATTGTTGCTGTAGTTCTTATCTTTGTCATGGAATAAGACCTTGAAAAGCAGGTAGTATGTGGCTACACAGAGGTGATGGGGAAGTCCTGTTAGAAGCGAGACACTGAAATAACCCTAGATTTTACAGAAGAGCAAGAAGGACAAATTTCCCTAACAAAGGCCATATAACAAAAAGCAGGACTACATATGTTGAGAATTATAACTAGATTTATTAAGCAATTGGGCATATTTTTTAAGGGCAGATTCAAAAGTGGTTATTAGGAAACAAGGTGTGTTCCAATTGTTCCTCCAATCCACTAAGTGTTAAAACAGCTCCACCACAACCCCTTGCTGAGCACCACCTGCAGAGACCATCCCGAGACAGAAAGATCATGAATCTGACTCACTGCAGCCTTTCTCATATTCCTGAATTGAAAAAATCAGAGTACACCTACCTGAAAGTATATTTAAAATACTCTATGGTACGACCCTTTGCTAGCAAAGTGGGGTATACAGGACTGAAGATAATGTTCGCTACATTCTAGATGCTTAGTCAAGTAACCAAAGCAAGGAAATAAAAGGACCAATCACCCTTAGAGACAAATTTCCACTCACCAAACATGGTATGGGCATTTAGTTAAGGTGCTGGAACATTGCTCACCAAGTCTGGTTCAGGGATTGATCAATTGTTTAATGACCCCCTTCTACTTTTAGAAGGAGAACATTGAGTTTGGATTCCCTTTCCCCGCCTCTTTTTCTTTATATTTTCTTAG
Seq C2 exon
GAAAAAATGATATATTTGGAGAAATGGTTCATCTTTATGCCAAACCTGGAAAGTCTAATGCAGATGTAAGAGCCCTCACATACTGTGACTTGCATAAGATTCAGCGAGAAGACTTGTTAGAGGTTTTGGATATGTATCCTGAGTTTTCTGATCACTTTCTAACAAACCTAGAGTTGACTTTCAACCTAAGGCATGAGAGCGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184611-KCNH7:NM_033272:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PU(45.5=47.1)
A:
NA
C2:
PF0002724=cNMP_binding=PD(53.4=68.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)