GgaINT0048092 @ galGal3
Intron Retention
Gene
ENSGALG00000011082 | KCNH7
Description
NA
Coordinates
chr7:22563965-22567574:+
Coord C1 exon
chr7:22563965-22564217
Coord A exon
chr7:22564218-22567365
Coord C2 exon
chr7:22567366-22567574
Length
3148 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
TCAATCTAATTTTCTTTCTGCAG
3' ss Score
-1.01
Exon sequences
Seq C1 exon
GTCCTGAAGGGTTTTCCAGAATGCTTACAAGCCGACATTTGCCTGCACCTTAACCAAAATTTGCTTCAGAATTGCAAAGCTTTCCGTGGGGCCAGTAAAGGCTGTCTTCGAGCCTTGGCTATGAAATTTAAGACAACACATGCTCCTCCTGGAGACACTTTAGTGCACTGTGGAGATGTTCTCACTGCTCTTTACTTCGTGTCAAGAGGCTCCATTGAAATTCTTAAGAGTGACATTGTTGTAGCCATTCTTG
Seq A exon
GTAAGTAAATTACTACAATGCACATTAAGTGTCAGAAAAGAAATATTTGTTGTTCCAGAGATAGGAAATCTGGATATTTAGTCGCTGTCACATAAAGTCAAACATAGAAAAAAATTAAGGAGCAAATTCTACATTATTCCAATAATTCATGTGCATCAAAGAGCCCTGGTCCACTATGAAAGCAGGAGTGAGTCGCATTTAACCCTGGGTAAACGGTGAGATGCACATTGAGGCAAGAACATGTCAGATTACTCCACTACTGACGATGCTGCATCAATCAAAGTCATTTGATGTCCTTTTCTTGAGCAGCATGGATACTGATAGAGAAGTGTGGGTAGCATATGGAAAAGTATAACAGATTAATCTGATCTAGATTGATACCTAACTTTAATAACACCATTATTGCCCTCATACTTCTTAAAACTACAGATCCTTCTTCCATTTAGTATCAGGTAATTAGTGAAAACAACCAGTGAACAGATAAGTAAGGATTTTGTTATACTGAAAGCTATACCAGCTGTTATACCTTTCAGGTGTTCTTTTGTTCTTTTTTTCATTTATCATCCACTGTGGGAATTTACAGCCAAAAAAGTAGCTGAAGCACAATGTGGATTGGTAGCAATGTGTTATTAATTCACTTGTGACTGATTATTCTGCTAGTACTTTGTGGAGAGAATTCATGAACAGAAATATAAAAGTATGCCTACAGCAATCCTTCCCTACATTTAGATAAAATTATCAAGATAATTTGTTATCTCATGCTGTTGCATCTCGTCACATGGGCCAGATTAAGGGACGAGTGTGCAAGGGCGCATGCAAGTACAACACTGTGAGTTGTTTACTTACCTGTATGAATGTCTTTTCATCTTTTACATCAAATACATGTAAAATTCTATAGCCCTCAATAACCAAGAAAAACAAGCTTATGAACTCATTAATTTCTTCCTGGATGAAAGATGCAAACTGGTTGTTTTTTGTGTGTTATACACATCAGATACTTGTGCGCCTCTCACACTGCAGCAGAACCCCAGGTAATTGCAGAGCAATGCCACGGCATATCTTCCAGCCCGTATCTTCTCACCCCAGGCGCTGAAGGATGGATCCTTGCTTCCCCAGGGAGTGGGAGTCCAGGAAGGCTGAGAGAGCCGTGAACAACAGCAGCCAAAAGTACTGTGGACCCATCTCTGTTACATGGCCCATGAGGCAGGAGCCTGCCTGATAGCTGACTCCAGACAATTAGATCTTGGTATCCTGAAAAATCTGGCATAATAAAAAAAAAAACAAGAGAGAGAAAAAAGAAAAGAAAGAAAGTGATAGAAATGAACAACAAAATTTAACACAAACCTAACAAAGATTATTTGTTCTTAACTAAATATTTTCCTCTTTCAGAAAAAAACTGTAAGGAAAAAAACAGACAAAAAACCTCTCTGTTTTTTGTTCTCTAGCATTGAAAAACTTCGCAGGTGATGTTTCCACTCTGGACAAGTTTTCCAACTTCATTGCTGAAATCAAAAAATTCCAAAAAATGATGGGTGTGTCCACCTGTTTTCCTCAGCTCATCATCACTATCTAAAGCTGGGTCTATCACTATCTAAGTATGGTCTGATCAATACTGGCCTGAAAGCAGTACTTCTCTGCCAAATTCTTAGGAAAGATGATGGCTGTGGACCTCACCTCTACTGCCTCTTTTAGGAAAAAAGATACTAAAGAACTGCCATCATATCAATGTTGTCATATTACAGAGAAGGTACTATATAACTTGTAGAGGGACCTCTAAGATACTAAGACCAGCAGGTCTATTCAATTATGTCAGCTAATCTCTGTTATATCACAGACTTCTAATACATTTCATACTTTTAACTATCTGTTGTGTCTAAAGGGTTGTGTTTGATGAAAGCAAAATGTTGAGAAAAGTGATCGATTTTGATCAGAAAACATAGTAAGATAAGAAAGTGATCACTGTTCATCACAGTTTCTTTCCAGTGAATCACGTTTATTGTTAAAAATGCATGTTTTATTTCCAATATGAAATTTTCTTGCTTCAGTTTTTTTGCATTGGTTCTTGCTTTGCATTCTTCATTATATTCTAGAGGCATTTCATACTGAGTAATTTTCTTCTCCTTAAGCATGTGTTCAATATTATCAAGTTATGTCCTTAATCTTCCTGTTGATAAGCTAAACAGACCATGCTCACCACAACTCAGACCATGATTTTTTTTTTTTTTGCATGTCTTAGCTACTAGCTCACCCATTTAGCAGCTTCTTTAAAAAAAAAATGGAGAAACCAGAACTATTTGCAGTAACCTAAAATAAAAACCACAAATGCTTAGAGGAGGCAAAATCACCCATGTCAACTGTTTTCAGTTGCTATGACCTCTGTTCTTTGCAACATGTGTTTTCCCAGGTATACTCCCCAGCTCTATTTTACAGGTATGCTGTGGATGCCTGTGTTTAAGAGTATTTTGTACTGGTCCTTGGCTGCTCTGCATTTGTGACAGTTAGCTGCAGATATAGGGAAAATAAGCAATTAAATAGAGGTGACAATTTTAGCAAATAGTGTGAAGGTGTCAACATTGATGAAAAGAATTGTAATAATATCAAAATAGAAGCAGCTATGTTTGAAGAGCTTCTTCAAAACAGCTTCTACATCTTGGAAGTTTAGCATTCTCTCCAAAACCTATAACACCTAGTATTTTCCTACCAAAATATATTTCAAGTAAGGTTTGTTTCTTTGTGCATTTTCAACAAAATGACTTTCTAGGCCAGAAAGGTCCTGGACTCTACTGAAAGTCAGAAATTACATCTTTGTCATTGTAACAGTATAATTTAAATCCATAAATAATGTTTTTCTGAGAAAGGAAAAGGAAGCTGCTTTTAGTCACACAATTTTGACAGAACTGAAGAAAAATTCTGATGAAACTAGATTTTTCTTTCACTTTTCCAAGTAAGTGACTATGTAATTTTATTGATTTTAATGTACCATTTAATAACAGTGCTTTTGATTTACATCAACACGTGCAACAGTAATCAGATTGTAATGCTTCATGTGAAATCAAGCATTCTACACAAATATCATACATAAATACAAGATTGAATTTAATGGTTTATTCACATTTGGAATAATAATCTCAATCTAATTTTCTTTCTG
Seq C2 exon
CAGGAAAAAATGATATTTTTGGAGAGATGGTACATCTTTATGCAAAACCAGGAAAGTCAAATGCAGACGTGAGGGCTTTAACGTACTGTGACTTGCATAAGATCCAGCGAGAAGATCTACTAGAAGTTTTGGATATGTATCCTGAATTTTCTGATCTTTTCCTCACAAATCTAGAACTGACATTTAATCTGAGAGACGAAACTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011082:ENSGALT00000018056:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PU(44.9=47.1)
A:
NA
C2:
PF0002724=cNMP_binding=PD(53.9=68.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]