RnoINT0077799 @ rn6
Intron Retention
Gene
ENSRNOG00000007528 | Kcnh7
Description
potassium voltage-gated channel subfamily H member 7 [Source:RGD Symbol;Acc:621112]
Coordinates
chr3:48706515-48709876:-
Coord C1 exon
chr3:48709624-48709876
Coord A exon
chr3:48706721-48709623
Coord C2 exon
chr3:48706515-48706720
Length
2903 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
CTCTTTTGGTTAATTTTTAGGAA
3' ss Score
8.8
Exon sequences
Seq C1 exon
GTCTTAAAGGGATTTCCGGAATGTTTACAAGCTGACATTTGCCTGCATCTAAACCAGACTTTGCTCCAAAACTGCAAAGCCTTTCGAGGAGCAAGTAAAGGTTGCCTCAGAGCTCTGGCAATGAAGTTCAAAACCACCCATGCCCCTCCAGGAGACACCCTGGTTCACTGTGGGGACGTCCTAACTGCACTGTACTTCTTATCCAGAGGCTCCATTGAAATCCTCAAGGATGACATAGTGGTAGCTATTCTAG
Seq A exon
GTGAGTGTTTTAGCCTGGGATAATGACAACTTGATGTGGGAGTAGTTGCAACCAATCATTACTTTAGAATGACAGATTAAAAGACTGGTTGCTAAGGAGTCTAGCGCTGATCATTCTAAAGCTTTATTTCAATTCAAACGTATATCGAATTAATCTTGCAGAAATGTCTTTTCTGGTTGTCTTCATTTTTGTTTACTATTTAAATACCTTCATGACTCTCTTCAGCTATGTAGACATTGAGGCCAAATTGAAAAAAAGAGTCAATTTTTTTTCATGTGTGGTCTTGACTTTGGGGTCGATCCCTTAGCATCTTAATATGAAATATTCAATGTAGACATACTAATTAACATGTTTCTACAGTAGCATGAGATAAGCATATATCTAAATAAATTTCATTTACTTACTATATGCTTAGAAAGGAAATTGGAGTCCTTGTAGAATGAAGTTGTGATTATATTTTCAGGACTAGGGATGATAGGGTACAAAATGAGTAACACGTGGTTTTGTATGTAAAGAAAAGTCCATGTTTAGTCTAACCTGTCTCTTTAAAAACCACCCCTGCTTATATGAACTCATAACATTTCTTTGAACTGTTAAGGTGATGGGAAGAGAAACAGAAAAAGCCAAGTCTATTCTCATTCTCTCTGGCTACATAGCTACAGGATCAAACTCCGTCTCCCAACAGCAACACTACCTCCACTGTCTGTGAAAATTAACTCTTTGTCCACAGATTTAATATACGGTTCCACTAAATATTAGGCATGTGGGCCTGGAGGTGTAGATTAGAGGCAGAGACCTTGCCTCGCACAGTAAAGACCCTAGGTTCAAGCCAATCTATCAATCTTTCAATTGATATATGCAGTTGAACGGTTTCTTTTCATTCAGCTCTCAGAGCTCACATCTGAGCATTAACTCAGAGTAGTATCTGTTCATTGTTAGACAGAGCCAGAGTCTGGCTCATTGGATGCCAAACAAAGAGGTTTAAATGATTCCCTTGATATTTTGATAATTTTGTTATGATTACAGTTTTTTTAAAAAATTCCCCAAATTGAGATGGTGTGAACTTTGATTCCTAAACCAATAAAGAGCCAAGGAATAAAAATAGTCTAAATCATCGTCTCAAGGGAGCGTTTTCTCTGGGCTTGGCACTGACAGCTTCTCTTGGTGTGTTACCATGGAAAGCAGAGGCTGATCTTCAAGCCAGCCTATCATGGCTTCTGGATGATCAACAACTAGTCTCTGTGCTTAGATAACAGTGACTATAGAGTGCTTCTCACTTCCTTCTTGTTCATGTACAGTCGTGGAAGGTAATTAAAATAAAAGCACAATGCTATTACCGTTCAAAGCGATAAAAAAAAGTCTAGACTAAGCCATTCAAACTAAGAACTTCAAGAACTTCTACTTTCCTGTCTTCATTTCCATGTAAGTTAACATTAAAATTATTATTCATTCTTCCTTTCAAAGGTCTATAAGTGTTTATATAAACCATGCCTAATGTCTTCTCTCTAATACAATTTTTACATATTGATACATTGCTTTTGACTTTTTCTTAAGTTCTCAATTTAAAATAAGAACATTCAAACACTTTCTGACTTGTTAGAGTTTTATTTTCATTAAACATCCTTGATAGCTCCCAAAGTTAGAGATATAAAAGCTAACATAATGCATAGAGGATTTTTCTTTTTTAATCTGAAAAGAACCTTGAGAATATGAGAAGAAATTACTGTTTTGTATTTTACTGCTACTAATGACCTTTAAAAGTGACTTTATAAAATACCCTACCAGTATTTACTAAGGGCATATGCCACACAAGTACCTTGATACTCAAAAACGGAACAATGGCCATGAAATTGGAAACTATTGGAGGATTCGATACTTAGGCAGATAAAGATATTGATTCTAATGTCAAAATGAATGGATATTAATCCTGCCTGCTTTTCTTTCCTCCACTCCACCCAACCATAAAGTGATGTTGTGCTAATAAGTTTACCTCTTTAATCTTCTTTCGATATTTACAAATATTGGATAATAACCACATCTTGGCAAAATTATTTTGTGGTTAGTGTGATAATATACACAAACATTTGACACAGAGCCTGGCCCCTACATGGTCCTCAGAAAATACACTGAATGTCAGACAGTACATGGTTAGGCAGGAGTGATGGAGAGCTGAGAGAGAGGACCACCGTATTTGTGGAAGAACAAAGGACACAAAGTTTCAGAGCAAAGAGAATGTGAGCAAAACCATGATTATATTTAGAGAGGACAACGAACTAAATACTTTAAGCACATGAATATATACATTAAAGGCAAATCCAAAACTGGTAACCTGAAGGAAAAAAGGTACATTGATATCACTTGACCATGTCATTGAGTGCTGAGGAATGGTGGAGCTGATAGTTAGCAAAGGCTCCAGACAGGATCCTGCTCAACAGAAAGACCATGAATCTAACTCATTTTAGTCCCTCAAATTCCTGGACTGACAGCCTCAGAACTCTTCTATCTGGAAGTAGATTTAGAAAACCATATAGCAAGATCCATAACTAGCACTCGGGGGTGTAAGAAAATAAAGACATTCTCTAGATTCTACATGTTTAGCAACATAAAGAAATGAAAAAGATTATAACAGAACCAAAGATTTATAACAGCAAAGTTACATTCCAAACCAATAGGTCCAGACATGGAATTTTGCTGTCCATGCACCAGTTGGTATAGGATCTCACATTTGAGATCTTTGGTCCAATGATTTGTCAGTTGATCAGTGTCCCATTCTACTTTTATGAAGAAAAAACGTAATTAATCCCTTTCTTTTCTTCCCATTCTTTCTTTTGTTCTTTCCTCCTCTCTCGCTTCTTCCTCCCCTTCCTCCTCCTCTTCCTCCTCCTCTTTTGGTTAATTTTTAG
Seq C2 exon
GAAAAAATGATATCTTTGGAGAAATGGTTCATCTTTACGCCAAGCCTGGCAAATCTAATGCAGATGTGAGAGCGCTCACGTATTGTGACCTGCATAAGATTCAGCGAGAAGACTTATTAGAGGTCTTGGATATGTATCCGGAATTTTCTGATCACTTTCTGACAAATCTAGAACTGACTTTCAACCTGAGACACGAAAGTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007528:ENSRNOT00000009920:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PU(45.5=47.1)
A:
NA
C2:
PF0002724=cNMP_binding=PD(53.4=68.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]