MmuINT0085527 @ mm10
Intron Retention
Gene
ENSMUSG00000059742 | Kcnh7
Description
potassium voltage-gated channel, subfamily H (eag-related), member 7 [Source:MGI Symbol;Acc:MGI:2159566]
Coordinates
chr2:62735973-62739396:-
Coord C1 exon
chr2:62739144-62739396
Coord A exon
chr2:62736179-62739143
Coord C2 exon
chr2:62735973-62736178
Length
2965 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
TTCTTTTGGTTTATTTTTAGGAA
3' ss Score
9.85
Exon sequences
Seq C1 exon
GTCTTAAAGGGATTTCCAGAATGTTTACAAGCTGACATTTGCCTGCATCTGAACCAGACTTTGCTACAAAACTGCAAAGCCTTTCGAGGAGCAAGTAAAGGCTGTCTTAGAGCTCTGGCAATGAAGTTCAAAACCACCCATGCCCCTCCAGGAGACACCCTGGTTCACTGTGGGGATGTTCTAACTGCACTGTACTTCTTATCCAGAGGCTCCATTGAAATCCTCAAGGATGATATAGTGGTAGCTATTCTTG
Seq A exon
GTGAGTGTTTTAGCCTGGAATAATGACAACGTCATCTAGGAGAGGTTGCAACCATCATTAGTTTAGAATTATAGATGAATAGACTGGTTGATAAGGAGTCTAGCATTGATCATTTTAAAGCTTTATTTCAATTCAAACATATATCAAATTAATCTTGCAGAAATATCTTTTCTTAATGTCTCCATTTTGTTTAATATTTAAATATTCTTATGATTCTCTTTAACAGTTGACAGCTATTTAGACATTTGAGGTCAAATGTACAAAATCATTCAATATTTTTCTTTACATGCATGATCTCAGCTTCATGGTTGCCACTTAATATGAAATACTCAACGATGTAGGCATACTAATTAGTATGTCCCTACAGTAGCATGAGATAAGCTCATGTTTATCTCATGAAATAATGAAATCTTAATAAATTTCATTTATTTGCCATATACTTAGAAAGGACATTGAAGTCCTTACTTATTAGAATGAAGGAGTATATTATCAGGACTAGGAATGATAGAATACCAAATGAGCAAAACATGGTTTTGTATGTAATAAAAAGTCCATGTTTACTCTAATCTGTCTCTTTAAAAACGAACCCTGTTTATGTGAACTCCTAGCATTTCTTTGGACGGTTAGGGTAATGGAGAAAGGAACAGAAAAAGTCAAGTCTACTCTCATTCTCTCTGACCACATAACTACAGGATCAAGCTCCCTCTCCAGGAACACCACCTCCAGTGTCTGAAAATTAAGTGTTTTCTCATAGATTTAATATACAGTTCCATTAAATATTAGGAATGCAGACCTAGAGGTGCAGATTAGAGGGAGAGCCCTCACCTCACATAGTCGAGGCCCTGGGTTCAACCCCAAGTATTATCAATCACTCATTTTATATGTGCAGTTGAATGGTTTCTTTTCACTCAGGTCTCAGAGCTCACACCTGAACATTAATTCGGAGCAGTATCTGCTCATTGTTGGACAGATCCTGAGTTGAGCTCATTAGATGCCCTACATGAACAAAGAGGTGTAAATGATTCCCTTGAGATTTTGAAAATTTTATAATTACAGTTTTTAAAATTCCCAAATTAAGATAGTGCTTACTTTGATTTCTAAACCAATAAAGATTCAAGGAGTAGAAATATGCTACATCATCACCTCAAGGCTGCTTCTCAAGGGAGAGTTTTCTCTGGACTTGGCACTGACAGCTTCTCTTGATGTGTTAATGGAAAGCAGAGGCTAATCTTTAAACCAGCCTGTCATAGCTTTTACACGAATGACACTTAACCTCTGCACTTAGATAACAATGACTATAGAGTGCTGCTCAGCATCACAGGTCTTCCTTCTTGTTCATCTATAATTATGGAAGATAATTCAAATAAAAATTCCATGCTAATACAGTTCAGAGCCATGGGAGGGGGGGAGGTGTCTAGACTAAGCTATCCAAACTAAAGAATTTCAAGAACTACTTTTCTGCTTTAATTCCCATGTAAGTTCGCATCAAAATTATTATTCATTCTGGTTTTCAAAGGTCTAAAAGTATTTATTTAACCTGTGCCTAATGTCATCTCACTAATATAATTTTTTAAATTATTAATATATTGCTTTGACTTTTCCTTATTAAATTCTCATTTTTCAATAAGAGCATTCCAGCGTTTTTTGACTTGTTAAAGCTTTATTGTTTAAACATCTTTGATAGCTCCCAAAGTTGGAGATATAAAAGTTAACAGAATGCATAGAGAAATTTTCTTAATCTGAAAAGAACCTTCAGGATATGTGAAGAAAGTACTGTTTTGCATTGCTACTAACAACCTTTAAAAATGACTTCATAAAGTAGCCTATCATTATTTGCTAAGGGCATATGCCATGTGAGTAACTTGATGCTCAAGAACAAAACAATAGCCATGAAATTTTGGAAAATATTTGGAGATTTGATATATAGGAAGATAAAGATATTAATTCTAATGTCAAATGGAATGGGTTTTAATCCTGGCTTCTTTTCTTTCCCCCACTTTGCCGAACTAAGAAGTAATGGTGTAATAATCATTTCGCCTCTTTAAACTTGTTTCAATACTTACAAATTTTGGATAACAATCACATCTTTGCAAAATTATTTTGAGGGATAACATGATAATCTATATAAACATTTGGCACAGTGTCCTTCCCCTACATACTCCTCAGAAATACAGGTTATTCTTATTGTCAATGAAAAAAGTTGAATATCAGACAGCACATGGTTAGGCAGAGGTAATGGAGAGGTGATGGAGAGGACCACCAATACTTATAAAAGGACAAAGGGCACAAAGTTTCAGAGCAAAGAGCATGTGACCAGAATCATGATTAAATATGTGGAGGACAAAGAACTGAACAATTTAAACAAATTGATATATTCATTAAAGGCAAATCCAAAACCGGTAACTTGAAGAAACAAGGTACATTGATGTCACTTGTCAGTGTCAGTGAGTGCTGAGGAGTGGTGGCGCTGTTAATTGGCAAGAGCTCCAGACAGGATCCTGCTCAACAGAAAGATAATTGATCAAATTCATTTTAGCTTCTCAAATTCCTGGACTGACAGCCTCAGAACACTTCTATCTGGAAGTAGATTTAGGAAACCGTAGATCAAGATACATGGTTAGGACTCAGGGATGTAACAAAATAATGATGCTTAGCAACATAAAGAAATGAAAGAGATTATAGCAGATTCAGAGATTTATAACAGCAAAGTTACAGTCAACAAAAACAGTACAATAAGTCCAGACACAGAATTTTGCTGTCCATGTACCTGTTTGTATAGGATCTTACATTGGAGATCTTTGGTCCAATGATTTGTCAGTTGATCAGTGTCCCTTTCAACTTTTATAAAGAAGACATTTAATTAATCCCCTTTCTCTTCTTCCTTTTCTTTCTTTTGTTCTTTCCTCCCTTCTCCTCTTCCTCCTCCTCCTCTTCCTCCTTCTTTTTTCTTTTGGTTTATTTTTAG
Seq C2 exon
GAAAAAATGATATCTTTGGGGAAATGGTTCATCTTTATGCCAAACCTGGCAAGTCTAATGCAGATGTGAGAGCACTTACGTACTGTGACCTGCATAAGATTCAGCGAGAAGATTTATTAGAGGTCTTGGATATGTATCCAGAATTTTCTGATCACTTTCTGACAAATCTAGAACTGACTTTCAACCTGAGACATGAAAGTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059742:ENSMUST00000075052:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.029
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PU(45.5=47.1)
A:
NA
C2:
PF0002724=cNMP_binding=PD(53.4=68.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types