BtaINT0079625 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001899 | KCNH7
Description
potassium channel, voltage gated eag related subfamily H, member 7 [Source:HGNC Symbol;Acc:HGNC:18863]
Coordinates
chr2:34131594-34134950:+
Coord C1 exon
chr2:34131594-34131846
Coord A exon
chr2:34131847-34134744
Coord C2 exon
chr2:34134745-34134950
Length
2898 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
TCTCCTTTTTGATCTTTTAGGAA
3' ss Score
12.21
Exon sequences
Seq C1 exon
GTCCTAAAGGGTTTCCCAGAATGTTTACAAGCTGACATTTGTCTACATCTCAACCAGACTTTGCTGCAAAACTGCAAAGCCTTTCGGGGGGCAAGTAAAGGTTGCCTTAGAGCTTTGGCAATGAAGTTCAAGACCACCCATGCACCTCCAGGAGACACCCTGGTTCACTGTGGGGATGTCCTCACTGCGCTTTATTTCTTATCCAGAGGCTCCATTGAAATCCTCAAAGATGACATTGTGGTAGCTATTCTGG
Seq A exon
GTAAGTGTTTTAAAACTGGATAGTCACAAATTCAGCTTTTAGCCAGTGTCGTGCATGGTTTAAAATGACAGAAAACAGGACTTTCCATTTATTTATGAGTACTGTTTAAGATTGATGAATAATTTTAAAGCTTTACTTAAAATTCAATTCAAATCAAATTAACCTTGCAGAAAATACATTTTCTTGACTCTCTCACTTGTTCTCTGGTGTGTAAATGCTTCCATTCTTGGCAGCCACTTAAGCCTTTGAGGCCAAATATATGAAAATGGCATTTTCCTTTTCATGTTACAGGATCGTGGATTCATGCTGAGTCCTTATCACCTTTAAATAAGATGTATATGTAGTAAGCATACTTGCTAGCATGTGCCAATGCCTGTCATGAACTGGATTTGTATGTTGATGAATCCATCTATTTGCTGTACACTTTACTACTGTGTCCCATCAGACAGAATTATATGAGTCCTTACCTAGGTTATCAGTAATATAGCGCTATAAACAACACACAGGGATCAAGGTGTTGAGGAGATAAAAACTCATAAGTTAAACTGGTTTGGGTGCAAAAGAAAGTCCATCTCTCCAATCTGCCTCTTCAAAAATAAATTTAGCCAGTGTGAACTGGTAGGATTTCTTTGGAATATTAGAACAATTGGCAAGCACGAGGGAGCAGAGAGAAATGAGATCAGTTTTTGTTCTCTCCTATCCCTTAGCCAGTAAGTTTAAGGCTCTGTCTCCCTGGGAGCACCCACTCCCAATGTTTGGGAACATGTGCACTCATTTTTTTCCCCATGGATTAAATCTGGTTCTATTTAAATAAAAAGTACATAATTCAATGATTTCCTTTTACTTGACTCTTGATATTAACATCCAAAGGATGAGGATATGGGCTGTTTTCTTCACTATTGTATAGAACCAGTGGGCATAACACAGACCCAATACATGAATGAAGATGTTTGAGAGATTTATATATCTTGATAATTATACTATGATGAGAAATTTTAAAAACATTTTTTCAAACTTGATCAGAGGTACAATTTGGTTTATAATCCAATAAGCAGACCAAGAATAAAAATATATTTTAAATCACTTAGCAGCTACAGAGTAAAGTGAGATTTTCACTTGATTTGGCCTTGACAGTTCTAGTCTGTTGCCAGGGAAGAAGCATGCATCACTGCATTCCTGATCTTCAAATCAGCCAGCCTTAACTTCTACAGGAAGGTAACAAGCTGTCTTGCTTTATAAAATAGTAATTTTAGAATGTAGTTAAGCTGTACATGGTGACTGGCTTACTCTTTGCTCACTTACAATCATGTAAAATACAAATACAAAGCTCATGCTGAATTTAGTTCAGAGCTTTTCTCTGATAATATCTGTACTAACATATCAAAACTATAAAGAATTTCAAGAGATTCTCCTTTCCTGTCTCCATTTCCATGTAAATCTTCACTTAAAAATCTCAGAAATTATGATTCCTCATTCAATTTTTTTAAAAGCTAAGTATTTATTTAAATGAAAGTTAAAATATTCTCTCCAACATCAATTTTTCTTATAAAGATATGGCATCTGATTTCTCCCCATTACATTCACATTTAAAATAAGAACATCACAGAGTTTTTCTTTTACCTTGAATTTTTTTGTTTAAAAGTCTTTGGTAGTTTCCATAGTTGGGTATATATGAACTTGTTTACCAAAAAGATAAGTAACAGATCCTCTAAGATTTTTCTAAATCTGAAAAGTAGCTTTAGGATATATGTATATATGTAAGAAGGTACATTTTACAGTGCCATCTACTACCTTTAAAAGTTACATAATCAATACTCCATCAGTAGTTAATGCACATGTATTTCAAAAGTACAATTTTTAAGTATCTTGGCTTTCTGAAGAAAGATCTAAGTGGCCGTGACATTCAGGGAAAATAATGGGAAGAGATGAGATATATCAAGTGTGCAAAGATTTTAACTGGAGTCAGAATTAATGGGATGTAGTTATGGCTGCTCTCTCTCTACCTTTATTTCACCCAACTAAGAAGGTGACCTTGACTTAATCCGTTTACACTCTTTAATCCTCTTTCATTTTCATAACATTTGGATAATAATTAGTAATTTTTTCATTAGGTTATTTTGGGGATCAAGTGAGATAATGCGCCTAAGCATTTGATGCAGAGCCTGACACCTACTTAGTCTTCAATAAGCATTTGTTGTTACTGTCATTATCATCCTCATAGTTGAAGGAGACCTAGGAAAGAAGTGACATGTGGCTAGGCAGAGGGGATGGGAAAGGCCCATCAGAAACCAGACACTGAAATAACCCCAGGCTTGGCAAAAAAGCAGGAAGGACACACCTTTGGAATAAAGGCCATACAGTTTAAAAACATGACTGTATTTGTTGAGAAAATATAACTAGATGTATTATTAAGGGGAGTTCCAAAAGTAGTTACCAAAGGAAACCGGGTATATTCAAATTGTACCCCTAGTCCTCTAGGTTAAAAAAGATCTACCATAAACCCATGCTTGGCATCACCTCCTGAGACCATTCTGAGATAGAAACTTTGGGGCAGAATTAGACCACACTAGACTTGCCAAAAACATAGCAGACCAAAGCCATGTTTGCTGCATTCCAGATGCTTAGCCAAAGAATCAAAACTAGGAAATAATGGGGATTATACCAGGACCAGGGCTCTAAAAGGTGAAATTCTGGTCAGCAAACAAATACGACTGGGGCAGTCAGTACGTGGCTCTAGGGTTGTGCTGCCCAAGTGTCTGTTGGCCGTCAGGTCTCACATGTGAAATGTTTGGTTCAGGGATAGGTCAGTGGTCCCCTTCAAATTTTAGAAGTAAAACATTAAGTTCAGATTTCTTTCATTTCTTTTTTTTTTTTCTTTTCTCCTTTTTGATCTTTTAG
Seq C2 exon
GAAAAAATGATATATTTGGAGAAATGGTCCACCTTTATGCCAAACCTGGAAAGTCTAACGCAGATGTAAGAGCACTCACATACTGTGACTTGCATAAGATTCAGAGAGAAGATTTGCTAGAGGTTTTGGACATGTATCCTGAGTTTTCCGATCACTTTCTTACAAATCTAGAGTTGACTTTCAACCTGAGGCACGAGAGTGCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001899:ENSBTAT00000002469:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.014
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PU(45.5=47.1)
A:
NA
C2:
PF0002724=cNMP_binding=PD(53.4=68.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]