GgaINT0048092 @ galGal4
Intron Retention
Gene
ENSGALG00000011082 | KCNH7
Description
potassium channel, voltage gated eag related subfamily H, member 7 [Source:HGNC Symbol;Acc:HGNC:18863]
Coordinates
chr7:20508786-20512394:+
Coord C1 exon
chr7:20508786-20509038
Coord A exon
chr7:20509039-20512188
Coord C2 exon
chr7:20512189-20512394
Length
3150 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
ATCTAATTTTCTTTCTGCAGGAA
3' ss Score
10.22
Exon sequences
Seq C1 exon
GTCCTGAAGGGTTTTCCAGAATGCTTACAAGCCGACATTTGCCTGCACCTTAACCAAAATTTGCTTCAGAATTGCAAAGCTTTCCGTGGGGCCAGTAAAGGCTGTCTTCGAGCCTTGGCTATGAAATTTAAGACAACACATGCTCCTCCTGGAGACACTTTAGTGCACTGTGGAGATGTTCTCACTGCTCTTTACTTCGTGTCAAGAGGCTCCATTGAAATTCTTAAGAGTGACATTGTTGTAGCCATTCTTG
Seq A exon
GTAAGTAAATTACTACAATGCACATTAAGTGTCAGAAAAGAAATATTTGTTGTTCCAGAGATAGGAAATCTGGATATTTAGTCGCTGTCACATAAAGTCAAACATAGAAAAAAATTAAGGAGCAAATTCTACATTATTCCAATAATTCATGTGCATCAAAGAGCCCTGGTCCACTATGAAAGCAGGAGTGAGTCGCATTTAACCCTGGGTAAACGGTGAGATGCACATTGAGGCAAGAACATGTCAGATTACTCCACTACTGACGATGCTGCATCAATCAAAGTCATTTGATGTCCTTTTCTTGAGCAGCATGGATACTGATAGAGAAGTGTGGGTAGCATATGGAAAAGTATAACAGATTAATCTGATCTAGATTGATACCTAACTTTAATAACACCATTATTGCCCTCATACTTCTTAAAACTACAGATCCTTCTTCCATTTAGTATCAGGTAATTAGTGCAAACAACCAGTGAACAGATAAGTAAGGATTTTGTTATACTGAAAGCTATACCAGCTGTTATACCTTTCAGGTGTTCTTTTGTTCTTTTTTTCATTTATCATCCACTGTGGGAATTTACAGCCAAAAAAGTAGCTGAAGCACAATGTGGATTGGTAGCAATGTGTTATTAATTCACTTGTGACTGATTATTCTGCTAGTACTTTGCGGAGAGAATTCATGAACAGAAATATAAAAGTATGCCTACAGCAATCCTTCCCTACATTTAGATAAAATTATCAAGATAATTTGTTATCTCATGCTGTTGCATCTCGTCACATGGGCCAGATTAAGGCACGAGTGTGCAAGGGCGCATGCAAGTACAACACTGTGAGTTGTTTACTTACCTGTATGAATGTCTTTTCATCTTTTACATCAAATACATGTAAAATTCTATAGCCCTCAATAACCAAGAAAAACAAGCTTATGAACTCATTAATTTCTTCCTGGATGAAAGATGCAAACTGGTTGTTTTTTGTGTGTTATACACATCAGATACTTGTGCACCTCTCACACTGCAGCAGAACCCCAGGTAATTGCAGAGCAATGCCACGGCATATCTTCCAGCCCGTATCTTCTCACCCCAGGCGCTGAAGGATGGATCCTTGCTTCCCCAGGGAGTGGGAGTCCAGGAAGGCTGAGAGAGCCGTGAACAACAGCAGTCAAAAGTACTGTGGACCCATCTCTGTTACATGGCCCATGAGGCAGGAGCCTGCCTGATAGCTGACTCCAGACAATTAGATCTTGGTATCCTGAAAAATCTGGCATAATAAAAAAAAAAACAAGAGAGAGAAAAAAGAAAAGAAAGAAAGTGATAGAAATGAACAACAAAATTTAACACAAACCTAACAAAGATTATTTGTTCTTAACTAAATATTTTCCTCTTTCAGAAAAAAACTGTAAGGAAAAAAACAGACAAAAAACCTCTCTGTTTTTTGTTCTCTAGCATTGAAAAACTTCGCAGGTGATGTTTCCACTCTGGACAAGTTTTCCAACTTCATTGCTGAAATCAAAAAATTCCAAAAAATGATGGGTGTGTCCACCTGTTTTCCTCAGCTCATCATCACTATCTAAAGCTGGGTCTATCACTATCTAAGTATGGTCTGATCAATACTGGCCTGAAAGCAGTACTTCTCTGCCAAATTCTTAGGAAAGATGATGGCTGTGGACCTCACCTCTACTGCCTCTTTTAGGAAAAAAGATACTAAAGAACTGCCATCATATCAATGTTGTCATATTACAGAGAAGGTACTATATAACTTGTAGAGGGACCTCTAAGATACTAAGACCAGCAGGTCTATTCAATTATGTCAGCTAATCTCTGTTATATCACAGACTTCTAATACATTTCATACTTTTAACTATCTGTTGTGTCTAAAGGGTTGTGTTTGATGAAAGCAAAATGTTGAGAAAAGTGATCAATTTTGATCAGAAAGCATAGTAAGATAAGAAAGTGATCACTGTTCATCACAGTTTCTTTCCAGTGAATCACGTTTATTGTTAAAAATGCATGTTTTATTTCCAATATGAAATTTTCTTGCTTCAGTTTTTTTGCATTGGTTCTTGCTTTGCATTCTTCATTATATTCTAGAGGCATTTCATACTGAGTAATTTTCTTCTCCTTAAGCATGTGTTCAATATTATCAAGTTATGTCCTTAATCTTCCTGTTGATAAGCTAAACAGACCACGCTCACCACAACTCAGCCCATGATTTTTTTTTTTTTTTGCATGTCTTAGCTACTAGCTCACCCATTAAGCAGCTTCTTTAAAAAAAAAATGGAGAAACCAGAACTATTTGCAGTAACCTAAAATAAAAACCACAAATGCTTAGAGGAGGCAAAATCACCCATGTCAACTGTTTTCAGTTGCTATGACCTCTGTTCTTTGCAACATGTGTTTTCCCAGGTATACTCCCCAGCTCTATTTTACAGGTATGCTGTGGATGCCTGTGTTTAAGAGTATTTTGTACTGGTCCTTGGCTGCTCTGCATTTGTGACAGTTAGCTGCAGATATAGGGAAAATAAGCAATTAAATAGAGGTGACAATTTTAGCAAATAGTGTGAAGGTGTCAACATTGATGAAAGAATTGTAATAATATCAAAATAGAAGCAGCTATGTTTGAAGAGCTTCTTCAAACAGCTTCTACATCTTGGAAGTTTAACATTCTCTCCAAAACCTATAACACCTAGTATTTTCCTACCAAAATATATTTCAAGTAAGGTTTGTTTCTTTGTGCATTTTCAACAAAATGACTTTCTAGGCCAGAAAGGTCCTGGACTCTACTGAAAGTCAGAAATTACATCTTTGTCATTGTAACAGTATAATTTAAATCCATAAATAATGTTTTTCTGAGAAAGGAAAAGGAAGCTGCTTTTAGTCACACAATTTTGACAGAACTGAAGAAAAATTCTGATGAAACTAGATTTTTCTTTCACTTTTCCAAGTAAGTGACTATGTAATTTTATTGATTTTAATGTACCATTTAATAACAGTGCTTTTGATTTACATCAACACGTGCAACAGTAATCAGATTGTAATGCTTCATGTGAAATCAAGCATTCTACACAAATATCATACATAAATACAAGATTGAATTTAATGGTTTATTCACATTTGGAATAATAATCTCAATCTAATTTTCTTTCTGCAG
Seq C2 exon
GAAAAAATGATATTTTTGGAGAGATGGTACATCTTTATGCAAAACCAGGAAAGTCAAATGCAGACGTGAGGGCTTTAACGTACTGTGACTTGCATAAGATCCAGCGAGAAGATCTACTAGAAGTTTTGGATATGTATCCTGAATTTTCTGATCTTTTCCTCACAAATCTAGAACTGACATTTAATCTGAGAGACGAAACTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011082:ENSGALT00000018056:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PU(45.5=47.1)
A:
NA
C2:
PF0002724=cNMP_binding=PD(53.4=68.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]