HsaINT0098194 @ hg19
Intron Retention
Gene
ENSG00000127603 | MACF1
Description
microtubule-actin crosslinking factor 1 [Source:HGNC Symbol;Acc:13664]
Coordinates
chr1:39812649-39815299:+
Coord C1 exon
chr1:39812649-39812882
Coord A exon
chr1:39812883-39815149
Coord C2 exon
chr1:39815150-39815299
Length
2267 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
3' ss Seq
CCCCTTTGCATTTTAATTAGACC
3' ss Score
6.13
Exon sequences
Seq C1 exon
GATTTGAAACAGCCCATGGCTGAAAGGAAAGCTCAGCTGGATGCTCTTGCTTTTGATATTCAGTTCTTTATCTCAGAACATGCCCAGGACTTGTCCCCTCAGCAGAATCGACAGATGCTGAGGCTTCTGAATGAACTGCAGAGGTCCTTCCAGGACATTTTGGAACAGACTGCCGCTCAGGTGGATGCCTTGCAGGGCCATCTTCAACAAATGGAGCAGGAAGCCCTGGTGAAG
Seq A exon
GTCAGACTGAACCAGCAGCTGGGCTCAGTTTGTCTTTGGGGATGTCCTCTGTCATTGGGTTTTCTGGCCAGACTCTGTGTATCATGATTGCAGGAGCCTGGGTTTACCAATTTTGAAATTTCATGTCATGCAGGCCAGTATGGTTCTAGTCCAGGAGGCACTTGTTCTGGCTGTTGTTCTTGCCATGTCTTTGGTTTTATGTATGTGTGAGAGAATGTATGTGTTGACATGTGTATACATATGCAAGTGTTTTCTTTTAGTGAGACTTTTCCTTCGCTGTATCTCATTGTCTCTGAATTTCAAATGAAAATCATGTATCTAGTCCTTTCCCTACTTTACTTTCTCCTTTAGCATTGTTTTGAGGGCTCGTAAGAACATCTAGATACCCTGAGCTCTTGAGGAGAAGGGTTCTGAAATCAGTTTCATTCTATTTAATCTATTTCAAATGATTTACCATAAGGTTCCTTGACAATCCTTAAGTGGCTGACAAGGAAATTTTATTAGAATCGTATTAATTTTTGGCTCTTTAAGAATTAATATTATTTTCTTGCACCTTTCCTCACAGTATAGTGCCCAGTGCTTATTCGCTTATTCAATCATGGAAAACAGTATGTAGAAGCAGGATGATACTAAAACAAACAAACAAACAAACAAAAAACTAACCATCCTACCATCTTCCATCACAACTCTCTTCTTGCAAAGCTCAACTCAACATAATTACATTAATAGTAACATCAAAACCTTAGAATACCCAGAATGATGTTCATGCCATTTCTGCTATTTGAATAGTAAGTTGGCATATAGCAAGATGATATTAGAATTGTCATTATCACCATAAAATTTGTCTCAAGGGCTCCTTTATTAAATGTTGTGCAAAAAATTGAGCTTTTGAGTCAGACTTTAAGGGAATTAGGGTAGTTGGTGCCATATGTCCTGTATTACTGTCTCATTTTTTCAACTATATTGAAATTGAGATATATTAATGGAAAGCTTTAGGTTACCTTTGAAAACTGAGCATGTGCAATGCTCGCATTCAGGAGTTTATATAGCATGATATAACCTTTGGATAATTAATGAAGTAAAATTCATCTGAGCCACATTAAGACAAGACCCAGCCCAGATTCAGGGTAGACTCCTGAGCTGCAGCAGGTGATAGAACTGCATGTGAACATTCTCCCTGAGCATGTAATTAATTCCACAATGCTTATTAACCTTGTTATTGTCAGAAATGCTCTGCTTCTCTCAATATTTGCCTTGGATGTGTGTGTATGTCTCTGTGTTAACTTGTTTGCTTTGCTTTTTTCAGATTCAGTCTGCACCCATCCTAACCCATGAAGATCCTGTTTTACAGCTGAAGAGCTCTTAGGAGTTCTCTTCCAGAGCCCTTCTATTTGTCCTAAAGAGGGGGAGAGAGGGCCAATTTGGGCACCTGTTTGTAAGTGCAGGTGACTAAAGCGCCATCAGAAGGTAGAAACTGGTGGAAAATGGTTTTAGAAGGATGGTCAGGAGAACACATCATGCTCAATTGCTCAGTCAGGTGCTTCAATGTCATACAACTGAGATAAAATCTAGAGAAAGGATCAGGCACAGAAACATATTCCCTCTCTCTCCTTGGGCCTGGCCTGTTCCTTTGATATTAGTGTAGACACCTAAAGGACTGAGCCAGTTGCTATTCTTGGGCACTTTCCTTCTCAAAATAGCCAAATCTAGCCCTTCATGCCTGGCGTGTAATCATTTTATTTAATGAGTCTCTGGATTGATGAGACATTTGATTTATAAAGTCAGCTCAATTATTAAGAAGCTCGATTAACTTATGAATTATCCAGGTCTTTGATTTTTCTTTCTACTCCAATTCTTCTACTTTTGCATATTATGTAGCAAATCTCTGGTTCTAGTGGAGGGATTGATCAGAACCACTAAATTATTATCATCACCATTATCATGTGTGGATTTCAAGCATCTGGGCTCTTTCTTCTCCATTTCCAAAGATAATAACAGCAGTCTGGTGAAGGAGCTCTCAAACCAAAACCTGAACTAGAAACATTCTCATAATTATCCTGATTATCCAATCCATAGACCCAGATCAATGGACTGTCCAAATGAGGGGAGCTTTCCGAATATGATTTCTATGTCTTTTCCTATTCTAGTCTCCCACCAACTTTTCCATCCTTGAGATATAACCTTCCTGTTTTACATTTCAGGGAGTTTCTTGTATTTGCAAAATGTGAATTACGAAATGTCTCTTGACCCCTTTGCATTTTAATTAG
Seq C2 exon
ACCCTGCAGAAACAACAAAATACCTGTCACCAGCAACTGGAGGATCTTTGCAGTTGGGTAGGACAGGCAGAAAGAGCACTGGCAGGCCACCAAGGCAGAACCACCCAGCAGGATCTCTCTGCTTTGCAGAAGAACCAAAGTGACTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000127603-MACF1:NM_033044:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=NA C2=0.581
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(58.0=83.3)
A:
NA
C2:
PF0043516=Spectrin=PU(40.7=92.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)