BtaINT0088405 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021024 | MACF1
Description
microtubule-actin crosslinking factor 1 [Source:HGNC Symbol;Acc:HGNC:13664]
Coordinates
chr3:107291970-107294574:-
Coord C1 exon
chr3:107294341-107294574
Coord A exon
chr3:107292120-107294340
Coord C2 exon
chr3:107291970-107292119
Length
2221 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
3' ss Seq
CCCCTTTGCATTTTAATTAGACC
3' ss Score
6.13
Exon sequences
Seq C1 exon
GACTTGAAACAGCCCATGGCTGAGAGGAAATCCCAACTGGATGCACTTGCCTTTGATATTCAGTTCTTGATCTCCGAGCACGCCCAGGACTTGTCTCCTCAGCAGAACCGGCAGATGCTGAGGCTTCTGAATGAAGTGCAGAGGTCCTTCCAGGACCTTGTAGAAGAGACTACAGCTCAGGGGAATGCCTTGCGGGACCGTCTTCAACAGATGGAGCAGGCTGCCCAGGTCAAG
Seq A exon
GTCAGACTGAACCAGCGGCTGGGCTCAGTTGGTCCCTGGGATGTCCTCTGTCTTTGGGTTTTCTGGCCAGACTCCATCTGTCATGGTTCCAGGAGCCTGCGTTTACCAATTTTGATTGGTCCAGGCCAGTTTGGTTCTGGTCCTGGAGACAGCTGTTGTGACTGTCTTTCTTGCTGTGTTTTTGGTTTTATGTATGCGTGTGAGAGAATATGTGTGTTTACGTGTGTATGCATGTGCAAGGTCTTTTCTTCTTAGTTAAACTTTACTGTAACTGTGTCTCATTGCCTCTGACTTTCAAATGAGAATTTTATCCCCAGCCTGTATTTCCCCTACTCTCCTTCAGTATTCTTTTGAGGGCTGTTAGGAGCAGTTAGATACTCTGAGCTCTTGAGAAGAACAGTCCTGAAGTTAGTTTTATACTGGGGCTTTTCAGATGATAACAGTAAGATTCCTTGACCACCTTCAGACAGCTGACAAAAAGATTTTTATCAGAATCATATGAATTCTTTAGCACCTTTGAAAATTATTATTTTCTGGCACCTTTCTTCACACTATTGTGTCTAGTGCTTATTCAGCTGTGGAAAACTGTGTGTAGAAGCACTGTTGATAAACTGCAGGAAGCCAGGATAATCATCTCCCCACCTTCTATCACAAGCCTCTTCTTGTAGAACTCAGCATAATTGCATGGTAACATCATAACCTTAGAATACCAAGAATGATGCTTATGCCATTCTTCTGGATGAATAATAAATTGAAATTCACCAGGATAGTATTAGAATTGTTATCACCAGTAAAACTGTCTCAGTGTCTCTTTTATTAAATACTGTGCATAGTAGAATTGAGCTTTTGAGTCAGGCTTAAAGGGTATTTAGTGAAGTCTGTATGTCCCTTGTTACTGCTTAGTTGTTTCAACTGTATTAAAATTGAAGTAAGATAGTAATGAAATATGATAGGTTACCTCTACATCTGGAAATTTGCAGTGTCCTCACTTGGATTTTATACAGCTTGGTGTAGCTTATGGATAATTAATGTAATAGCAAAGGTCTGGGCCACCTTAAGATACAGCCCACATCCAGAGTAGGCCCCTGAGCTGCAGAAGATGGTCCAGTTGCATGTGAACATTCTTTTTAAGCGTGTAATTAATTCCACGACATTTATTAACCTTGTTATTGTCAGAAATGCTCTCCTTCTCTCTATATTTGCCCTGAATGCATGTGTTTGTCTATGTGTTAACTTGTTTGCTTTGCTTTTTTCAGATTCAGTCTGCACCCATCCTAACCCATGAAGATCCTGTTTTACAGCTGAAGAGCTCTTAGGAGTTCTCTTCCAGAGCCTTTCTATTTGTCCTAAAGCGGGGGAGAGAGGGCCAATTTGGGCACCTGTTTGTAAGTGCAGGTGACTCCAAATGCCATCAGAAGGTAGAAACTGGTGGAAAATGGTCTTAGAAGGATGATCAGGAGAACACATCATGCTCAATTGCTCAGTCAGGTGCTTTGGTGTCATGTGACTGAGAGGTCTGGAAAAGGATCAGGCACAGAAGCAAATCCCTGCTCCCCTCAGGCCGGCTTTTCTCTTGGCTATTGGTGTAGACCCCTGAAGAACAGAGCCCATTGCTATTCTTGGCCACTTCCCTTCTTCTCAAAATAGCCAAGCCCCTCACGCCTGGCAAGTAATCATTCCATTTAATGGGTGTCTGCATTCGTGAGACATTTGATTTATATAAAGTCAGATTAATTATTAAGAAGCTCAATTAGCTTATAAATTATCCAGTTTCTTGATTTTTCCTCCTAGTCCAGTCCTTCTAATTTTCCATATTATGACTTCATATGTAGTGTATCATCCAGTTCCTGTAGAAGTGATCAGAACCTATCATTTATTATCATATGCAGTATCATCTATGGATTTTAAGCATCTAACCTCTTTCTTCTCCATTTGCATGGATAATAAGCAGTCTGGCAAAGGAACTTCCAAACCAAAACCTCAGAGCATTCTCACCTGAAATCACTCCTAATTGTAATTCAGGCCATAGATCTAGACCAATAGACTGTCCAAATGAGGGGAACTTTCTGAATATGATTTCTGTGCCTTTTCCTGCTCTAGTCTCCCACCAACTTTTCCATCCTTGTGATATAACCTTCCTGTTTTACATTTCAGGGAGTTATCTTATATTTATAAAATGAGAATCATTAATTATCTCTTGGCCCCTTTGCATTTTAATTAG
Seq C2 exon
ACCCTGCAGAAACAACAAAATACCTGTCACCAGAAACTGGAGGATCTTTGCAGCTGGGTGGGACAGGCAGAAAGAGCATTGGCTGGCCATCAGGGTAGAGCCACCCAGCAGGATCTCTCTGCTTTGCAGAAGAACCAAAGTGACCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021024:ENSBTAT00000033270:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.256 A=NA C2=0.520
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(58.0=83.3)
A:
NA
C2:
PF0043516=Spectrin=PU(40.7=92.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]