HsaINT0100451 @ hg38
Intron Retention
Gene
ENSG00000139793 | MBNL2
Description
muscleblind like splicing regulator 2 [Source:HGNC Symbol;Acc:HGNC:16746]
Coordinates
chr13:97365136-97366553:+
Coord C1 exon
chr13:97365136-97365171
Coord A exon
chr13:97365172-97366458
Coord C2 exon
chr13:97366459-97366553
Length
1287 bp
Sequences
Splice sites
5' ss Seq
TTGGTAGGT
5' ss Score
7.03
3' ss Seq
CATGGTTCCCCTCCTGAAAGTAC
3' ss Score
3.97
Exon sequences
Seq C1 exon
GGTCAGTTTTGTGCATGACACCCGCTACCAGTATTG
Seq A exon
GTAGGTTTCAACCTTTTTTATTTGTCTTTTATATGATGTACAATACCTTCACTTGCTTGAAATTTATTTCAGAGATGGTAGAAATGCTATAGGAAATAGTAGATTTGAAGGCTTATTTGGCTTTAGAGTTAACATATAGGTTTTTAAAAATGTACTTGTATATTTAAGAAAATGACGGTTTTAATGTGACCTCTTGTGCTAGAACAATCACTACAAAAACATAAAGCCACAAGTACGAGTCTGCTTTTTAATGATTTGTGTTTTGTTTCTCTTTATAGTTTATATGGTATAGCGTAAGGAACAGAGCTTACTCTATCAGCGAGGCAGGCTAATTTCATCAATGTTTGAAAGTTTCATAGTGGTGTGCCTTTATCTCCTCTTTGCTGTGTGTTAGAGCGATCAGAGTTTCCCAGAAGTATTCATTTTTTACAAATTATAAATGGATGTATTTTGAAACCGCATGTCTGAGCTTCCTAACTTAATTATCTTTTCTAATTTTAAGTGCTGATTTATTTGGGATGATTTTTCTGCACCTCAGCATTCCCTTAGCCGTTCAATTTTAATAGCAGATAGTTGTCCTCACACACATGAATGCCTTGGTACAAACGTCTGTCTTTAGGACATATGGATTAGATCTATTTAGAGTCAAGAAAAAGAAACATTGCAAATTTTGCCTGGCTATTTCAGAGTAACTGTATTAGAATTTGCATCAAGGCTATGATGTTTGCTCCATCATTTATTGATTCAAATAAACCACAACCCACAGCAGTTGCATTTCATATAAGCAGTCCTAAATTGAAAAAAAAAATTCAATTTAACCATAATTCCAAAGAACATCCTATCCCAAATTAGGTCTCCATATGGAGACTTGGATGTCTCAGAGTTTATGATTAAAAGTGATGATCACATATTCTTACTTCACTGGACATCACCTTTCACAATTTTAGAAACAACCATTATTGCATACACTGTATACACTGAATTGGGAATGGATCTATTGTTAGAAATAAAATGTTTATAAATACATCAACCAAAGTAATCTGCTTTGGCCTTTCTGGGAATCACTGATTATGTTTTAAAACTTCCTTTAATTGTACTTGTAATAAGCTATTTTCCCTTTTTTATTTCTCTCCCATGCTTCCTTGCTTTGCATTGTGATTGCATGCCATCTGCTGGTTTAACCCATGATGGCTTGCTGCTCTGATATTCACCATGCCAAAATACCACTTCTATTACCATAATGCTACACCCTCCTGTTCATTGCTCCCATGGTTCCCCTCCTGAAAG
Seq C2 exon
TACCCATGATGCACAGCGCTACGTCCGCCACTGTCTCTGCAGCAACAACTCCTGCAACAAGTGTCCCCTTCGCAGCAACAGCCACAGCCAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000139793:ENST00000345429:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.141
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development