RnoINT0090154 @ rn6
Intron Retention
Gene
ENSRNOG00000010737 | Mbnl2
Description
muscleblind-like splicing regulator 2 [Source:RGD Symbol;Acc:1591755]
Coordinates
chr15:105764135-105772403:+
Coord C1 exon
chr15:105764135-105764288
Coord A exon
chr15:105764289-105772308
Coord C2 exon
chr15:105772309-105772403
Length
8020 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGT
5' ss Score
10.65
3' ss Seq
CATGGTTCCCCTCCTGAAAGTAC
3' ss Score
3.97
Exon sequences
Seq C1 exon
GCCTTCCCTCCCGGTGCTCTTCACCCTTTACCAAAGAGACAAGCACTTGAAAAAAGCAACGGAGCCAGCACGGTCTTCAACCCCAGCGTCTTGCACTACCAGCAGGCTTTGACCAGTGCGCAGTTGCAGCAACACACGGCGTTCATTCCCACAG
Seq A exon
GTACGTGCCCTTACTCTCCACGTCTGTGTCCTGTGTCCTTCTGGTCATGTGCTTTCTTCTCATTTCTTTAAGCTGTTTGGTGGCATCTAGTTTGCATTTAGAAGGTGCAAATACAGGGTGGCCCACCACAGCCATGGCTACCTAGGCCTGTTGACCTGGCTTTGAGAGCTAAAGGCAGTTAGCATTCTAGAGCCAAGTGTTTGGTGGGATTTAGCTTGAGAGACAGGGAGCAGGTTAAAGCTTTGGGTCTCTTCTATTTATGCAAGCCCGGTAAAGCAGTTTATGTAAGCAAGATTTTTCTTTATATGAGATAATTGAAATTTGTCCTTAACACTCAATGACCTAAAAACATAAATTCCAGTAAATACTAACCGTTTTCTTCCTGCTTCTATTCAGAGCACTAAAAAGGCTAAGGCTACTCAAATGAAAGCAATCTCGTATCTTTATATCCATTCTCTCTCTCTCCATCCTTCTCCACTCTCACCAAGTTCACAACTTATCTGGGGTGCTTGCCCTCCATTTCTAAGCCAATGAGTGACAAGAGGAGGGGCTAGCATCCCTCAGCCCACCACTCGCTAGAGACCATCTGATAACCTCAGGGTCTCATGGGCAAAAGGGTCTTCATGAATTCCTCATCCAGTGGACTGTTTTACAAATGAGAAAACTGAGGCCCCCCCACAATAATGAGAAGTGACTTTCCAAGGTGGCAGAGCTGACACAAACACCAGGCTGCTGTTCCAGTGCCTGGTTCCATTTACATAACATTATACCACCTCCACTGGCCCCTACATGGAGTCTACAAACTTCTCCCCCCAAAATCAGATTAAAGTGGTTTTTTTTTTATTTGTTTTGCAGTAGCATGAAAAATTAATTCAGGTGAAGGAAACCAACGTAACACTTATCCATTCCCATGCCCCTCCTCACCATATTTTACCCAGTTCAGAGACTGCAGACACAGTCACATGCACACACCCACACCCCCCCATACACCCTCACAAACATGGTCATCTTCCCTGGCCAACTCTACCTTTTAGTCTCTGTTAGAAACAGGTGACTTAACCCTTGTTGGGAAGAACAGCCCCTGGGTTTTCCAAGCCTATATTTTTGTCCCATCACAGCAAGGAGACATTAACACTTATCCATTCCCATGCCCCTCCTCACCATATTTTACCCAGTTCAGAGACTGCAGACACAGTCACATGCACACACCCACACCCCCCCATACACCCTCACAAACATGGTCATCTTCCCTGGCCAACTCTACCTTTTAGTCTCTGTTAGAAACAGGTGACTTAACCCTTGTTGGGAAGAACAGCCCCTGGGTTTTCCAAGCCTATATTTTTGTCCCATCACAGCAAGGAGACATTGTCTATGTGATTAGATATATTGATCTTAGAGGCCATAGCCTATGAACATTAGGGTTGGAGGTAGCTAGTTTTTATTCCAGTAACAGTCTTTGCATAAAAACTATAAACGAATGGTAATCTATCTGAATTAGTATTTTAAATGAATTAGTAACCTATAAACTATACTTATTAATAAAAATGCACTGTCAGAAAGCACGTGAGTTCTGTATCTATATTAAAAATATTTTCATATCTCACCCTGTTGCAACCTTAATTAATGACATTCCATGCAGTCCAAGCTTAGCCCTATTTGTGATGGTAACGCACCTGAAATAACATAGTTACCAGAGGGTCAGCTCACCCTGAGGATCCTGTGTGGTTACTACAAGTGTCTCATTGTAGACCTTGTGGCCATTATAGACCGTTAAGAGAGAGAAAAAAATTACTGAATGAAAACTATGAAAGACAAGTCTGTTTCTTAAGAACGGGTAATACAGACGTTACCATCTCCTGGGAGTACCAGTGAGGCCCTTTACAGCACGTGGAATACCCCAATCCAGTATGGACTGGCTGGCTAATTCATCAAAACTCTCCCCACTCTAAGATTCTGTAAAGACTCCCTTAAGTATTTGCTAAGCAAGGGTGAAGAGTCCCTATTGGCTGGGCTGTGTCTGTCGCCCTCTGGTGGATTCCTCAGGAACTGCTCAACTGTGCTGGCAACTTTCTGTAGCCTTTGGAGGCCAAAAGGTGAACTGTAGCCTGGTTAGTTCTGTGAATTACAAGTATTTATAGCATATTTACTATTGCTATAAAGATCACAGTGGATAACCATGTGAATTTTGTGTACTGGAGTGGTGTTTGAACTATCAAGAAATTCACTACACTTCTCTGAAGTGACAGAAATAATTTTACTAAAATAGGTTCAGCAGAAGTTCTCATATACACAGAAAAATCTCCACGACTGTGGTAGGCTTTCTTGTTTGTCTGCTTCAGGGAGTCTTTCTTATAAGCCATGTTTCCAACTTTATATAAAAATGACCGCGATAATCATTTGCACTGTTGTTTTTAAACCTCTGCTGGTCAGGTGACGACACTCTGGTGATTTTTTTGGCAGATGGTTAACCCATTATTTTCAGTGAACAATTTTTTAATCCTTCTGTTAATGTTTTACATGAGCAGTTTTCATACATACGGATCAAAAGCATTTTTTTGGTGTGTATCTTCTTGGACGGTGACCTACGTAGAAGGCCATGCACAGCAAAACTTTGTTATGTATTAAAATCCTCCCACTGACACAGTGTGAATTGGGATCTTAGGAAATCTGCCTCTAGGCTTTCAATTCCAATGTAAGACATAGAGTATGGGGTTATTCTCTACAACTATGGTGGGTGAAATTTTTCCTTTTTTATTTTTCTTTTTTTTTTAAACTTTTTATAGGGGTTATTTTAACCAAGAAGTTAATACATTTCCCTTGCTACGATAAGAGAGTGGCAAAATCGTGCATGGTCTCAGAAACAGCCGTGTGATTAACGGCTTTGGGCATCTCTGTGACAAGTTTATCTTGAATTACTCTAAGTGTTCCTGGACACACTGTTATTGTTCCTCAAATCGGCACAGTTTTGTCAGTAGCGAGAAGTTATTTGCAGATGGGAAAACTGAGGCTGTGTTTACACTACAAAACAGCATGCACAACTGAGAATTACCCAGCTAGTTCTGGCTCACGGCAGTTTGAGATGAAGTATCTGTGCAGTGGAAGAAAGAAGCACGTGTTTGAGATGCTAATTTATCTAGAGCATCTGCAACCTGGTGAGGCTCCCCGCTGGTCAGAGTAACAGTGCAGGGTCCTTCCTTAAAATACTTCATTACATTGGAAGTGCATGTGGAAGGTTCTAGGCCAGACATTTCTGAGTAATGAGAAACCATAAGTGTTACATAAAGTTTCTTACGCTCTTGTGAAAGGTTCACCTTCAGTGGAAACTGTCTGCCTAAATTCAAAACGTATGGACTCTGTTCAGTTCAGCAGGCATTCCGTAAGCATGTGCTAGAGTCTGAGCTGCAGACACACAATAAAAATGTAAAGGGGCCCAGAGCTGGATAACAACCAGGGTCCACAGTATGAAGGACGAGACAAAGGGTTGAGCTGGGATGGAGGAGTGAGAGGCAAGTGTTCACCTTCACCAGATGTTGGCATGAACAATACAGAGAAGGGAGATTTTCCAAAGCAGGAGAATTTGCTAACAAATTTAAGGGGGGGGTGAGATTTTACTGTTAGGGAGGAACATACTGGGCAGGTATGACAAGAATAGGTTTGAAGAACAGAGCACCATTCCCTGTAGTGATAGCATGCATTAATCATAGGATCTGTGGGAAGAGCAGGGGGTAGAACTAGGTAAAAGGTGGGGATGAGGATTTCAAAGCAGAGCAGAACCAGGATCTGGCATTAGGAGAGCAACCCTCATGTCCTAAGCTCCATTTGTCCCATGTTCAAATCACTCTTGGCCGGCAGAGAGAGGGGCCCAGTGAAGTAGCGGGGTTGGGCATTTTCCACATCCAGGACACAAGCCAGAGTGACACACTGCCCTCTGTGACTGCAGGAGTGGTTTCTGATAGTTCACACCCCTTGTATATTCACAAGTGTAACTCTGGAAGCCATTGAGAAAGCATGTTCATTACAGAACATGGGAAGAATAAAGAGGGATTTTTCAGAATCTTTTGAAGCCTAACACAGTTAACTCTAAAGTGGAGAATTTTACAAACTAGACCCTTTAATAACTTTCAGGAATAAATTTCCCCCAGAGTGTTTTTTAAAGTAGGCTGGAACACTGACTTCCACACAGGGGTATCCCAAGGTGCCCTATGCATCTAGTTAAATGGGTTCTCTGCCTTTTTGAGTCCACAGCAGAATGAGAAAAATGCTAAACACTTGTATAAATAGGCTATTAAAATTTAGAGTAGTATGAAGGAAAAGGCAAGAGTTCAAATAATTAAAAGAAATGTAAATGGAAACTGACTTAGGTGACTGGGGGAGGTGGGGAAATTAAGACGAGATGATTTTCTGAAGAAATGTCTCGGACTTTGACACCTGAGGAAAGAAAGAAGTCACTAAAGATTATTCTAGATCTGGGGTGGGGGGCCCAAAATTAGATTAAAAGTATGATGTGTTCAATTGAAAGCAAGGAAGGCCCATCCAGATAGACCTTGGTACCAGCAAGGAGGGATGCGGTGGAAAGGTAGTCAGGGCCTGGGCTAGAAGGGCCTCCATCCTCAAAGCAGCAAAGCCTTCCCAGAAGTGGAGTGACTGCCAGCAGAGTGGATCCTGGAGTAGGGGGAGCACGAAAGCCAGACAGGATGCTGTTGCAGGGCTGACATGAGTAGCGATGGGATGGGAACTTGCAGAGCAGCAGAAGTGGTGACTAGGCTCAGAAACAGCCTCATGCTGGCTCAGTGGGGACGGGGCTACATGAGGCTGAAGTGTCATGCAGGTGATGACATCCATCACGTGTTACCAGATGTGGAGGAGACAGAGCAGGAGATAGCACAGTTTAGCGTGTTCCATTGGAGACCCCTGTGGAACCCAGGTTGGGAGGCCAGGAGAAACGTTAGGTAGAGAGACTTTCAATCTAGCAAGGCACAAAACGTAGAAGCCACGAGATCCCTGAGAGCTTTGGAATGTAGGAGTTGAAACACTCATAAAAGATCCACAGAGCAGGGGGGAAAAAAAAGGATCCAGGACAGGCTCTAAAAACTCCAGCACATAGAGAGAGAATTTAGTACAAGTTTTTAGAAGTGCATGCATGCATGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGAATTCAAAGAAAGAAAGTGGCTTAGCATGCAGAGTGTAGGGAAGTGCAAAATGTCCTGGAAACTGTGGATGAAGTTATAACAGAGCGAGAATAAAACCAACTAGAAGAGGATTGAAGGGCTGAAGGACAGATGGAAGCCAAGAAATCAAAGTGTGGTGCAGGGAACTTTCTAGATGTTTATGAAAGTAGAGAGATGGGGATGGAGGAGGAGATCATATGAGATGCATGTGAGTACACGTGTGTGTCTCGGTGTGCTGCCACATTTCCAGTTTAAAAAAAAAAAAAAAGAAGCCAGCAGTAGCCTGCTTTGGATAGGCTTTTCCTAAGTCAGTGATAGCAGTCTGGTCAAAATGTAGGTCAGGCAAGAAGTCCTTATGAACATGAATGAAGATATTTAGATGCTAGATTCACATCTAACGTCTTAGCATGTAGTCCTGAAACCTTCAGCAGAGGCACCTACATTCGTTTAAAACTACCACTCTGACACATTCACAACCCTGAGTTTCCAGGAACCCCAACATTGCCTTCTTTACATTCTGAGGAACAGAGCCAGTGGCAGACAATCCCTCAGAGCTCCCAACACAGCTTTTCCGTCTTCTGCCTTGCATCGATGTTCAGTCAGAATTTCCTGACACATGTACATCAGGCATTAAGATCATTCACAGATACCACAGTTCTTCCCCAAGAAGCACTGGAGTTGCCGTCCCTCTCCCACCCACTAACCCAGACGCCAATCCGAGACTCTCTAACTCTTCCATCCCTCGGAAGCCATGATCAAAATCTCTCACCAGGGTCCTACGATTGCTTGTGTGGCACTTAGATGTCACTGTCACGTGCCAGCCCTGTGCCACAGAGAGTCTCCTCGCCAGAGCAGATCCCAGACCTGTGTGGCGGCTCTACTCAGGAGCGTCCACCTGTTCCTAGCGCCCAATGTGAGAGTCCCCTGCCCTATCTGTCAGGGCTTTGATTCAGAGGATTCGAACTCTCAATTCACTGTTCTTCTCACATTGCTATCCACACAGCACACATTTCATCACCAAAATGACTCAATGCCGAGCATCAGCTCTGGCCTGGATTTGGCTTGGACTCTACCCCTGGCCTGGCCTTGCCTTTGGCTCACACTGCACACACGACCTTGGAGGAGTTACTGTGCCTCAGATTTTTTCATCTGTAAAATACCTGCTCTCCACCTGACCGGGTTAACTTGATCACGTGTGGAAAACCCTTTGAGGTCTTCAGAGAAGGACACAGTTGTACCATCACATGCCATCCTCCTTAGGATCATGTTGACCTAGAGTAGAAAGGGGAGAGTGCTCAGAGAGTGGGACTTGGGATCTTATTGGCTTTTAAGGAAGTTGGATCTATCTGCTATACTGACGATGTGAACGGCCCTAAGAACTGTGTAAACTAACCTCCTTGTGCTTCGATCTCACTCTGAATGTTAACTCTAAACAGCTAACCTGTTTCTCTCCCTTTTATTCACCTTCCCCCCCATTGCATGACTTCAGGGTCAGTTTTGTGCATGACACCCGCTACCAGTATTGGTAGGTTTCAACCTTTTTTATTTGTCTTTTATATGATGTGCAATGCCTTCACCATTTGACATTTATTTCAGAGACAGTAGAGAATGCTTTAGGAAGTAGATCTGAAGGCTTAATGGCTTTAGAGTTAACGTGTAAGCTATGCTTGTGTATTTAAGAGAGTGATGGTTTTTAATGTGACCTCTTAATGCTAGAATGACCGCCACAGAGACGTAAAGCCACAAGCGCAAGTGTGCTTTTTTTTTTTTTTAAATGATTTGTGCTGTTTCTCTTTATAGTTTATCTGGTTTAGCATGAGGCAAGCAGAGGCAGGCTAATTTCATCAATGTTTTAAAGTTTCATAGTGGTGTGCCTTTATCTCCTCTTTGCTGTGTGTTAGAGTTATCAGAGTTTCCCAGAAGTATTTATTTTTGGAAAATAAAATTATACTTGGATGTATTTTGAAACCAAGTGTCTGAACTACCTTGCTTACTTATCTTTTTAGAGGGCAGACTTATTGGTAATGGCTTTTTTTTTTCTTGTTTTTGCTTTATTTTTGTACCTCCACATTCCCTTAGGTGGGGAATTTCAACAGTGGGGTCTTCTCTCACATTCAGGCCTTGGCACACAAGTCTGTCTTCAGGACAGCTGATCCATTTTACTTACAAATTCAGAAAGTAAACATTGGCAGTATGGATCTGGTTACTTCATGGTAACTGCTCTAGAATTTACGCCAAGGCCATCTCTTTTGCCTCACTGTTCAGTGACCGGAGTAAAGCATGGGGCCACTGAAACTCCACTTTACAATTGGGCTTCTAAATTTAAGGAAAAATTTTTTTGATTTAACCACAACTGATTCCAAAGTTCATCTTATTCTAAATTAGGCCCACTGAGCCTGTGATGTTTTGGAATATATGATTAGTCCACTTGGTTCACTGGATGTTACCTATCATGTTATGTAGAGAAACAGCCATAACTATTGGTCACGATGTCGTCCTCCGAATTGGGAATGGCTCTGTTGTTGGAAACAAAGTATTTGTAAACACGTTGATCAAAGCGGTGTGCTTTGGCCTTTCTGGGAATCACTGATTATGTTTGAAAACTTCCTTTAATTGTATTTGTAATAAGCTATTTTCCCTTTTTATTTCTCTCCCATGCTTCCTTGCTTTGCACTGTGGTCGCATGCCATCTGCTGGTTAACCCATGATGGCTTGCTGCTCTGATATTCACCATGCCAAATACCACTTCTATTACCATAATGCTACACCCTCCTGTTCATTGCTCCCATGGTTCCCCTCCTGAAAG
Seq C2 exon
TACCCATGATGCACAGCGCTACGTCCGCCACTGTCTCTGCAGCAACAACTCCTGCAACAAGTGTCCCCTTCGCAGCAACAGCCACAGCCAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010737:ENSRNOT00000014300:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]