DreINT0093803 @ danRer10
Intron Retention
Gene
ENSDARG00000018460 | mbnl2
Description
muscleblind-like splicing regulator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-9582]
Coordinates
chr1:2053666-2057967:+
Coord C1 exon
chr1:2053666-2053822
Coord A exon
chr1:2053823-2057872
Coord C2 exon
chr1:2057873-2057967
Length
4050 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
TGGTTCCCTTCCTGAAAAAGTAC
3' ss Score
1.61
Exon sequences
Seq C1 exon
GCGTTTCCGCATGGAGTCCTGCAGCCCCTACCAAAGAGACCAGCACTAGAAAAGAGTAACGGGGCCAGCACGCTCTTCAACCCCAGTGTCTTGCACTACCAACAGGCTTTGGCCAGCGCACAGCTTCAGCAGCCCACCGCTGCGTTCTTTCCCACAG
Seq A exon
GTAAAAGCACACACGCACATGTACGAACCCATGCAAACGCCCACACGCTGCTTTGTATTAATCCCTGGGTCAGCCTCTAAACGTTCAACCCTTTTCTTCTCCGTCATAACCGAGGCTCTTAAACAGCCGTTTGTCCCTTTTGCATGCGGTGAGTGTGCACGGAATACTAATGCACGCCGTTTTTTTAATAGGCGAAATGCAATTCGAGAGCGCTCTTAATTTGAATTTCAGCAGCTTTAATGGATGTTTGAGCTACTTTGATCTGAAAATGATAATTGGCCATAGATTACATTCGAAAGATTTCACAGAAGTGCTTTGATCTGCACATCTGTAATACTGTCGGATTATATTACTCACAAAACATGCTCTTTATAACCGGTCAACATGTACAGCAGCGGTGGATTTAGAAGGTGTTTCCTGGGAATGCATTAGAAAATTGATTCAGATGTAGAGTTTGCACATCTGTGTGTGAACATATAATGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATATAATATTAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGGTAGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATAGATAGATAGATAGATATAATATTAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATATAATATTAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATATAATATTAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGGTAGATAGATAGATAGATGGATGGATGGATGGATGGATGGATAGATAGATAGATATAATATTAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGGTGGGTGGATGGATGGATGGATGGATGGATGGATAGATAGATAGATAGATAGATATAATATTAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGAATATTATATAGAAAGACAGAAAAGACAACAGGCAGACAGATATATATGGATGTGTGTGTATCGGCCCGGCTGATCTATCACTGTAGCCTACATTGACATTAATCACAGTGCGCTACAGTAAACATCAGCTGTACATTCCTCCTACTGCCGCTCAGCACCTGTAGGCGCACCTACTGCAGTATTTTTACAACAAAAGCAGCTCTCTAAACCCAGGGTCTCACAGCCAGTCCAGCGGTCTAATCCCTCGTAGGTGTATTTTGTCATCACACACCCACATGATGGTTGTATTTCCTGTTAGCCGTCCTCCCTCTTCTCCAGCTCTGGCTCTTTTATAACAGCACTATGTCTATTTTAACTGTTTGCTTGCCGCATGACTGTACTGTATTTGTGTGTGTGTGTGTGTGTGGCTGGTTTTAGCCATCTTTAGCCTCCTGTTCCTCTTCTCCTACACTGCGCTCTAATTTCACACCGCTAAGCTACTGTCCTCTCACTGTGGCCCTTGCGATTATTGATCCAGTTGATCTTCCTGGAACACTGCGAGTTTTTTTGTTTTACTGGAATGACGACACGGTGGAGCGAGAGATCTATAATGACAAGCTGAATTGGATTTGTATGGCATGCTGAATACTGAATCTCTGGCTCTGTCTAATATGTTTTTCTTCCCTATTAACCTCTCTCCACTCTTCACTGCATGGTCACAGGGTCAGTTCTGTGCATGGCTCCTGCTAGCAGCATTGGTAGGTTCCTCCTCTTCCTGTCTGTCTGTCTGTCTGTCTGTGTGTGCGTATGTGTGCGCGTCTGTCGTTCCCCACCTCACGTAGAGATTTAGTCGCTCTTACAGGTGATGTGAAGCTCGACTGGGACTTTTATGTCTCTTAAACTTCTGTCAAACTAGCAGCATCTGATTTCGGCCGTATTCTGCTTCTGTTCACCTGCAAGAACGCTCTGTTTGTTTAAACTATTCACTTTTCTCTCTGGGGTTTTGCCGTTTACCGTATTTTTAAATGCATTATTTATTATTTGTGCTATAAAGTGCTATTAAAGTAATTCCTTATGTGCTGTTTATTATTCTGTAGGTTTGAAGTAATTTAATTTGATTCAATAGTGGCTAGTATTGTCAGTTTTTAGATATTTTATGTATTCATATTCTGTCTTTTTTCTTTTATTATTTCCAATGCTAAAACTTTTAAAATGTTTCTTTATTTAGATTTTTCTTATTTTTAAATTTGTATTGAATTTAATAATTATATTTAGAGATATTTAGTGTTATTGAGTATGTTTACATGGACACCAATAATCCAGTTTTAATATGATGAAGTCAGTAGTCTGATTAAGAGTCTACCATGTGGACAGCGATTTTTGATTAATTTATTCAGATTAAAGTCGTAATTGAACTAAAAATAAATGGAATTAAGATATGTCGAGTATTTTCAACCCAGGATCATTGTGAAAACGTAGTCCCGCGGATGTTTCTGGAGACCGCGAAATACATCCCGGGAGGTACGAGTTTGTGCAGTTTTTGTTTTCACGAATCCGTTATTATTCCATATGTAAACACCTTAATCTTATTATTGTCTTATTCAGATTAAGGCAAATCATTCAATGACTGATGTCCATGTAAATGTAGTCATGTTTAATAGTTTCAATTGCTATTATGACAGTACATTTATTTGGTTTATATATCTGTAGTATTAATTTTATTTAAATAATTTCAGAATTAGTTTAGTGTTATGATTTGTTTATTATTGTGGTTTAACTCTTTATATGTTCATGTTTTATTTGTTATGAAATGCGTCATTATTACAATCAATTTAATTACAAATCTTACATTTGTTTAATATGATCAGATTTTTCATTGCTGATTTTTAAAGTTTGCATTGTTATTAAATTAACACTATTTAAATTATCTTTATTTTCATCATTTGTTTGATTTAAACGGTAAATTAAGTCAGTATTTTGTGTGAAAACACCAGACCCAAGCAAACAGGCTGTTAATAATAGGCATTGTCTTGTGTCGTGTACTGTTGATTGGGGAAATTTGATCAGTTTCCTAGAGAAATAGCCCACTTAATCATAAATGACCCATCTGAGCCACACACACACACACACACACACATACACACAATCAAAGCCACTCTCTAAAGTTTGGCGCAGATTCTAGGATCAATACTTCAAGTCTCGCCCGATCCGAGCGAGACTGCCTAACAAACAGCACATGTAATCTATCACTGCACTAACTCATGCCAGATTCTCTGGGTACAACTGATTATGGTGATAAATTTCCTTGAGGTGATTATAATCAGCCTTTTTCCTCTGTTTGTTTTTTGTTTTATTACCCCCCCCCCATGCTTCTCTCGCTTTGCATCGTGATTGCATGCCATCTGCTGGTCTAACCTAACGATGGCTCGCTGCTCTGTAATATACACCATTGCTAAAAAAAAAAACAACATAAACAAACAACAAAAAATCAACCAACCAAACACCTGTTGCCATGGTTTCCATAATGCTCCACCTACCTGTTCATTGCTTCCATGGTTCCCTTCCTGAAAAAG
Seq C2 exon
TACCCATGATGTACAGTGCTACGCCTGCTACTGTCTCTGCAGCAACAACTCCTGCCACAAGTGTCCCCTACGCAACAACAGCACCAGCCAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000018460:ENSDART00000124534:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.759 A=NA C2=0.971
Domain overlap (PFAM):
C1:
PF149201=MTBP_C=PD(0.7=1.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]