MmuINT0096308 @ mm9
Intron Retention
Gene
ENSMUSG00000022139 | Mbnl2
Description
muscleblind-like 2 [Source:MGI Symbol;Acc:MGI:2145597]
Coordinates
chr14:120795673-120803954:+
Coord C1 exon
chr14:120795673-120795826
Coord A exon
chr14:120795827-120803859
Coord C2 exon
chr14:120803860-120803954
Length
8033 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGT
5' ss Score
10.65
3' ss Seq
CATGGTTCCCCTCCTGAAAGTAC
3' ss Score
3.97
Exon sequences
Seq C1 exon
GCCTTCCCTCCGGGTGCTCTTCATCCCTTACCAAAGAGACAAGCACTTGAAAAAAGCAACGGGGCCAGCACGGTCTTCAACCCCAGCGTCTTGCACTACCAGCAGGCTCTGACCAGTGCGCAGCTGCAGCAGCACACGGCGTTCATCCCCACAG
Seq A exon
GTACGTGCTCTCCGTGTCTGTGTCCTGTGTCCTTCCAGTCACGTGCTTTCTTCTCATCTCTTTAAGCTGTTTGGTCAAGGCATCTAGTTTGCGTTTAGAAGGTGCGAATACAGCCTGGCCCACCACAGCCCTGGCTACCTAGACCTGTTGACCTTGCTTTGATAACTAAAGGTAGTTAGCATTCTAAAGTAAAGGGTTTGGTGGGATTTAGCTTGAGAGACAGGGAGCGGTTAAAGCTTTGGGTCTCTTCTATTTACGCAGGCCCCCAAAAATAGTTTATGCAAGCAAGATTTTTTTTATATGAGATAATTGAAATTTGTCCTTAACACTCAATGACCTAAAAATATAAATTCCAGTAAATACTAACCGTTTTTTCCCTGCTTCTGTTCAGAGCACTAAAAAGTCTAAGGCTACTCAAATGAAAGCAATCTTCTGCTCGTATTTTATATCCATTCTCTCTCTCTTCATCCTTCTCCACTCTCACCAAGTTCACAGCTATCTGGAGTGCTTGTCCTCCGTTCTAAGCCAATGAGTGATGAGAGGAGGGGCTACTGTCCCTTAGCCTACCAATCGCTGGAGACCGTCAGTTTACCACGTGGTCTCATGGGCAGAAGGGTCTTCATGAATTCCTCATCCAGTGGACTGTTTTACAAATGAGAAAACTGAGGCCCCCAGGATAATGAGAAGTGACTTTCCAAGGTGGCAGAGCTGACACAAACACCAGGTTCCAGTGCCCGGTTCCATTTACATAACATTACACCACCTCCACTGGCCCCAAAAGTCTACAGACTTTCCCCCAAACCAGATTAAAATGGGGTTTTGTTTTTGAAGTGGCATGAAAAATCCATTCAGGTAAAGAAAAACAATGTAACACCCATTCTAACTCGATTCCCCACCTCCCACCCCCCGCAATATTTTACCCAGTTCAGAGACTGCAGACACGGCCACATGCACACACACGCGCGCGCACGCACACACACACACACACACACACACACACACACACACACACTCACTCACTCGCACAGACATGGTCATCTTCACTTGACCAACTTTACCTTTTAGTCTCTGTTAGAAACAGGTGACTTTGAACCTTATTGGAAAGAACATCCACTGAGTTTTTCCAAGCCCATATTCCTTGTCCCATCACAACAAGGAGACACTATCATTAATCAATGTGATTAGATATGTTAATCTTAGAGTCCATACCTATGAGCATTAGGGTTGGAGTTTATTCTAGTAACAGCCTTTGTATAAAAACTATAAATGAATGGTAAACTATATGAATTAGTATTTTAAATGAATTAGTAACCAATAAATAATATATATATATATATTAATAGAAATGCACTGTCAGAAAGTTCATGAGTTCTCAATCTATATTAAAATACTTTCATATCTTACCCCACTGCAACCTTAATTAATGGCATTCCGTGCTGTCTTAGCTTAGCGTATTTATGATTGTAACACACCTGAAATAACATAATCACCAGAAGGTCAGCTCACCCTGAGGATCCTGTGTGGTTACTACAAGTGTCTCAGTGTAGACTTTGTGGCCATTATATACTTTAAGGGACAGAAAAAAGTGCTGAATGAGAAACTATGAAAGACAAGGTCTGTTTCTGAAGAGTGGGTAATACAGACGATACCGTCTCCTGGGAATTCCAGTGAGGCCCTTTACATCATGTGAATACCCCAATCCAGTATGGACTGGTTGACTAATTCATCAAAAGCGTCCCCACTCTAAGATTCTGTAGAGACGCCCTTAAGTGTTTGCAAAGCGAGGGTGAATAGCATAGCTTAAGCAATAGCTCAGTGCTGTGGATGGGTAATGGTAAACAGTCCCTGTTAGCTGGGCTGTGTCTGTCCGCCCTCTGGTGGATTCCCCTGGAACAGTTCAACTGTGTTGGCGACTTTCTGTAGCCTTTGGAAGCTTAAAGGTGGACTGTAGCCCGGTTAGTTCTGTGAATTACAAGTGCTTATAGCATATTTGCTATATGCTATAAAGATCACAGTGGATAACCATGTGAATTTTGTGTACTGGAGTGGTATTTGAACTTCCAACAAATTCACTACACTTCTCTGAAGTGATAGAAAATATTTTATTGAAATAATTTCAGCATAAGCTCTCACCCAATTACATTGACAGAAAAATCTCCATGATTGTGGTAGGCTTTCTTGTTTGTTTGCTTCAGGGAATCTTTCTTATAAACAATGTTTCCAACTTTATGTAAAAGGTGACAGCAATAGTAATTATTTACCCTGGTTGCTTTAAAACCTCTGCAGATCAGGTGATGACACTGTGTGGTGATTTTTAGCAGATGGTTAACCCACTATTTTCAATGAACATTTTTTTTAAATCTTTCTGTTACTGTTTTACATAAGCAGTTTTCATACATACAGATCAAAAGCATTTTTTGTGTGTGTCTTCTTGGACGGTTCCCTGCAGTGGAAGGCCATGCATAGCAAAACTTTTATATGTACTGAAATCCTCCCACTGACACAATATGAATTTGAATCTTAGGCAATCTGCCTCTAGGCTTTAAGATTTCAATGTAAGGCACAGGATATGGGATTATTCTCTACAACCATGGTGGGTGGAATTCTCCTCTCTTGCTTCTTTCTTTTTAAAAAAAACAAAAAAACAAAAAAAATTATAGAGGTTATTTTAACTAAGAAGTTTATACATTTCCCTTGCTATGATAGGAAGGTGGCAAAATCACCCATGGTCTCAGAAACAGCCGTGTGATAAATAGCTTTGGGCATCTCTGTGACAAGTTTATTCTGAATGACTCTTAAGTATTCTTGCACACACTGTCATTGTTCTTCAAGATGGCACAGTGCTGTCAGTGGCGAGAAGTTATTTGCATTTTGCAGATGGAAAAACTGAGGCTGTGTTTACACTACAAAACGGCATGCACACCACTAAGAATTACCCAACTAGTTCTGGCCCACAGAAGCTTGGGATGAAGTACTTGTGCAATGGAGGAAGGAAGCAAACGGCTGAGATGCTTACTTGTACAGAGCACCGGCATCCCGGTGAGACGTTGATCAGGTCAGAGAAAAGGCAGTGCAGAGTCCTTCCTTAAAATACTTCACTATGTTAGAAGTGCCTGTGGGAGGCTCTAGGCCAGACATTTCCGAGTAAAGAGAAACCATAAACGTTTCATAAAGTTTCTCACACACTTGTAAAAGGTCTGTTCACCCTCAGTGGAGACGTATGGACTCTATTTGGTGCACTGAGCATTCCTGAAGCATGTGCTATGGTCTGAGTTGCAGACATGCTATGAAAATATAAAGGGTCCCAGAGCTGGGTAAAAACCAGAGTCCACAGCATGAAGGATGAGCTGGGTGGAAGGGTGAGAGGCAAGGTGTTCATCTTCAGCAGATGCAGGCATGAACAATACAGAGCAGGGATATTTTCCAAAGCAGGAGAATTTGCTAACAACTTTAAAGGGGAGTAAGATTGCACCGTTAGGGGAAGAACATACTGGGCAGGTATGACAAGAGTAGGTTTGAAGAATAGAGCCCCAGTCCCTGTAGCAATAGTATACATTACTCGAAGGATCTGTGGGAAGACCAAAGGGTGCAGCTGGGTGAAAAGTGGAGAGGTGGCTTGGAAAGCAGAGCAGAACCAGGATCTGGCATGAAGAGAGCAATCCACCTGTCCTAAGCGCCATACGCCCCATGTTCAAATCACTCTTAGCCGGCACAGAGGGGCCCAGTGAAGTCACGTGGTCAAGCACTTCCCACATCCAAGACACAAGCCAGAGTGACACACTGCTCTCTGTGGCTGCAGGGACAGTTTCTGATGGTTGACACCCCTTGTGTATTTCACTAGTTTAACCCAGGAAGCCCTTGAGAAAACCTGTTCACTATAAAACACAGTAAGAATAAAGGGGGATTTTTCAGCAGTGACTTTGAAGCCTAACACAGTTAACTCTAAAGTGGAATATTTTACAAACTAGACCCTTTAATAATTTTCAGGAGTAAGTTCCCCCCCCACCAAAGTGCTTTTTACAGTCGGCTGGAACACTGACCTACAAACAGGGGTACCCCGAAGTGCCTTATGCATCTAGTTAAATGGGATCTCTGCCTTTTTGAGTCCACAGCAGAATGAGAAAGATGCTAAGCACTCATATAAATAGGTTAATAACATTTAGAGTAGTATAAATGAAAAGGCAAAGAGTTCAAATAATTAAAACGAAACAGAAACAGAAACTGACTTAGGTGATGGGGGATATGGGGAAACTAAGATGAGATGATTTTCTGAAGAAATGGCTCATACTTTGACACCTGAGGAAAGAAAGAAGTGGCTAAAGAGTATTCTAGATCAGGGGCAGAGGAGCCCAAAATTAGAGTAAAAGTCTAAAGTATTCAGTTGAAAGCAATGAAGGCCCATCCAGATGGACCTCGGTACCAGGGAGGAGTGCTGAGGTCGGGAGGCAGTCAGGGTCTGGGCTAGAAGGGCCTCCATCCTCAAAGCAGCAAAGCCTTCCCAGAAGCAAAGTGAGTGTGCCAGCAGAGTGGAGGCTGGAGCAGAGAGGAGCAGGAGGGCCCAATGGGATGCTATGGCAGAGCTGATAGTAGCAGTGTTGGGATGGGAACTTGCAGAGCAGCAGAAGTCATGGCTAGGCAGACAGGCCCTCGGCGGCTCAGAAGCAGCCACGTGCTGGCTCAGCGGGGAGACGGACCTGGGATGACCATGAGGAAACAGCGGCATCTTACAACAACGGAGGCTAAAGGTCACACAGCGATGGCATTGGTCACATGTTTCCCCATGCGCAGGAGACCAGACGGGAAAGAACACAGCTTAGCGTGTTCCGCCGGAGAGTCTCGTGGAGGAGAGGGGAGGTCAGGAGAATAGTTAGGTAGAGAGACTTTCAGCCTGGCACGGCACAAAACATGGAAGCCATGGAATCAGTGAGAGTTTGGGAATGGATGGCCTGAAACGCTCATAGAAGATCCACAGAGCAGGAAAAAAAAATTAAATAAAGAGGACCCAGGCAGGCTCTAGAAACTCCAGCATATATAAATATTAGAGAGAATTCAGAAGAAGCGTATAGAAGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGCGCTCATGTGCGTGTGCACGCACGTGCATGTGTACGTGTCTTAAGAAATCAAAGAAAGAAAGTGACTTAGTGTGCAAAGTGTAGGCAAGTGCCAAAATGTCCCGGAAACTGAGGATGAAGGTGTAACCGTGTTCTGTGGATCTGAGGGAGAATAGAACCAGCTAGAAGGGCATTGAAGGACTGATGGGCAGATGGGAGCAAGGGATTGAAAGCGTGACGCAGGGAACCTTCTATGTTTGTGAAAGTAGAGAGAGGGGGATGGAGGAAGAGAGCGTGCGAGCTGCACGGGAGTTGCGTGTAAGCACATCTGTGTGTGTCTCTGAGTGTGTGCCAAGGTGGATGTACTGCAAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGACTAGAAGTAGTCCGCTTGGATAGTTGTTTTCTAAATCAGTGATGCCTGGTCAAAATGTAGGTCAGGCAAGGAGGTTCTTATAAACGTGAGTGAGGATATTTAGTTTCTAGATTCACATCTAACATCTTAGCAGGTAGTCCTGAAACCACACCTTCATGACCCTGAGTTTCTAAGAATCCTTATATTGCCTTCGTTTACATTCTGAGGAACAGAGCTCCCAACGCATCTTCCCACCCTCCTGACTTTCATTGCTGTTCAGTCAGAATTTCGTGACACATGTACATCATTAAGACCATTCACAGAAAACAGAGTTCTTCCCTAAGAAGCAGTGACTTTGGCTTCCCTTCTCCCACTAACCCAGACACCAACCAACACTCCCTAACTCTTCGATCCCTCGGAAGCCTCCTTGAAGTGGCCATGATCAAAATCTCTCACCAGGGTCTTAGTGCGGTCCCAGTTTTCCACAGTTACATATATGGCTCTTAGACTTCACTGTTACATGCCACCCCTTTGTCACAGCAAGTCTCCTAGCCAGAACAGATCTCAGACCCATGCAGCAAGTCCATCCAGAAGCTTCCGTCTACATTCCCAGCACCCAGGTTGTTGCTCAAGAGACCCCTGCCATACGCGGCAAGGGCTTTGACTTAGAGGATGTGAAATCTCAACTCACTGTTCTTTTCACCTTTCTATCGACACAACACACATTTCACCGCACTCGGGAGTGTAGCGCACTCTGGCGAGCATCAGCTCTGGCCTGGATTTAGCACGGAACTCTACCTCAGGCCATGTCCTTGGCTCACACTGCACTTGACCTTGGAGGGGTTACTGTGCCTCAGATTTTTTCATCTGTAAAATACCTACTCTCCACCTGACAGGGTTAACTTGATCATGTGTGTAAAATCCTTTGAGGTCTTCAGAGAAGGACACAGTTGCATCATCACATGCCATCCTCCTTAGGATCATGTTGGCCTAGAGTAGAAGGGGAGAGTACTCAAGTACTCGGAGAGTGGGGCTTGGAATCTTATTGGCTTTAAGTAAGTTGGATCTATCTGCTATACTGACGATGTGAACGGCCCTAAGAACTGTGTAAACTAACCTCCTTGTGCTTCGATCTCACTCTGAATGTTAACTCTAAACCGCTAACCTGTTTCTTTCCCTTTTATTCACCTTTCCCTCCCCCCATTGCATGACTTCAGGGTCAGTTTTGTGCATGACACCCGCTACCAGTATTGGTAGGTTCCAACCTTTTTTTATTTGTCTTTTATATGATGTGCAATGCCTTCACTGTTTGACATGTATTTCAGAGACAGTAGAGAATGCTTTAGGAAGTAGATCTGAAGGCTTAATAGCTTTAGAGTTAACGTGTAAGCTATGCTTGTGTATTTAAGAGAGTGATGGTTTTAATGTGACCTCTTAATGCTAGAACGATCACCACAGAGACGTGAAACCACAAGTGCAAGTGTGCTTTTTAAAAAAAATGATTTGTGTTGTTTCTCTTTATAGTTTATCTGGTTTAGCATGAAGCAAGCAGAGGCAGGCTAATTTCATCAATGTTTTAAAGTTTCATAGTGGTGTGTGCCTTTACCTCCTCTTTGCTGTGTGTTAGAGTTATCAGAGTTTCCCAGAAGTATTTATTTTTGGAAAACAATTATACTTGGATGTGTTTTGAGACCAAGTGCCTGAACTACGCTACTTACTTCTCTTTTTAGAGGGCAGACTTATTTTTAATGGCTTTGGTTTTTTAGTTTTGTTTTTGCTTTGCTTATTTTTGTGCCTCCACGTCCATTCCCTTAGATGGGGAATTTTAACAGTGGGGTCTTCTCTCGAATTCAGGACCTTGGCACACAAGTCTGTCTTCAGGGCAGCTGATTCATTTCACTTACAAATTCAGAAAGTCACCACTGGCAAAAATGGATCTGGTTACTTCGTAGTAACCGCTCTAGAATTTACACCAAAGCCATTTCTCTTGCCTCACCTTTTAGTGACCGAAGTAAAACATGGAGCCACTGAAATTCCACCGTTCAGATATGCTTCCAAATTTAAGAGAAAAATGTTTTTTGGTTTAACCACAATTGATTCCAAAGTTCATCCTATTCTAAATTAGGCCCTCTGAGCCTGTGGCGTTTTGGAATTTATGATCAGTCCACTTGGTTCATTGGGTATTACCTATCATGTATTGAGAAGCAGCTGTAGCTATCTATGGTCATGATGCCATCCTCTGAATTGGGAATAGCTCTGTTTTGATCAAAGCGATGCGCTTTGGGCTCTCTGGGAATCACTGATTGTGTTTGAGAACTTCCTTTAACTGTACTTGTAATAAGCTATTTTCCCTTTTTATTTCTCTCCCATGCTCCCTTGCTTTGCACTGTGATCGCATGCCATCTGCTGGTTAACCCATGATGGCTTGCTGCTCTGATATTCACCATGCCAAATACCACTTCTATTACCATAATGCTACACCCTCCTGTTCATTGCTCCCATGGTTCCCCTCCTGAAAG
Seq C2 exon
TACCCATGATGCACAGCGCTACGTCCGCCACTGTCTCTGCAGCAACAACTCCTGCAACAAGTGTCCCCTTCGCAGCAACAGCCACAGCCAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022139-Mbnl2:NM_175341:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.490 A=NA C2=0.438
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: