Special

GgaINT0123097 @ galGal4

Intron Retention

Gene
Description
muscleblind-like 2 isoform 5 [Source:RefSeq peptide;Acc:NP_001156846]
Coordinates
chr1:144594242-144597544:-
Coord C1 exon
chr1:144597391-144597544
Coord A exon
chr1:144594278-144597390
Coord C2 exon
chr1:144594242-144594277
Length
3113 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TATCATTGCATGACACGCAGGGT
3' ss Score
3.63
Exon sequences
Seq C1 exon
GCCTTTCCTCCCGGTGTTCTTCACCCTTTACCAAAGAGACAAGCACTTGAAAAAAGCAATGGTGCCAGTGCCGTTTTCAATCCCAGTGTCTTGCACTATCAACAGGCTCTTGCCAATGCTCAGTTGCAGCAACATGCAGCGTTCATCCCGACAG
Seq A exon
GTATGTCGCACCCGCACCGAACCCACCTTGTGCTAGGTAGCCTCCGCAGCGAGCAGTTGTGCTTACCGAAGGGTTACGCTCCCCACCCTGCTTCAGATGAGGCCTGCACAGATAATTTCCATGCTGATTTAATTCCTTCCGCAAAGCGTGAGGGGTCAGGCTGAAACTCCAACATGCCGTTAGACTGCTTGTCATTTTCATAGCCTCCATTATCGCCCACAGTTTGCCCTTTTTTCCTACATTGAATTGGCTGTATTTTGACTTCACCTGCTGGAGCTTTCCTAGGGAATGAGAGGACGAAACACTGCTAGGAAAAGTCTGGGAAAAGTGTATGGCTTTGGAGATGCCAGGGGTGTCCCTTCATGGCCTCTCTGTTGCTGCTCTGCAACAGTGCGCCTTCTGCTTATACCCACGCAGAAGCAACCCCGGAACAAATTGCTCCCCACCTTGATGCTAAAGGGGCTTAGAGGTGTCAGATTGGTTTTCATGGCTTTCCTTTTGGCACGCAACCAGTGCTTTTCCGAGCATTTGCAGCTAAGAGCTGGGGCTGAGCCATCCAGGTGAGCCAAACCTTAGGGGATGTGCTCTGCGTGTCCGCACAGAAGCCTGGGAGATCCAGTCATCCAGAGGGCTACTGCAGCTCGAGCTGCACCACAGTGCTGGTGTTGGGACTCCTTTCTAACACCATGAAAGAAGGAGCACACGGTATTTGCACAGACAGTAACACCAGGATCCTTTAAATCACATTAGACACCTTCACTCCAAACTTTCTGCTGGTGAACTTCCCCTCTACAGAGTGAAGTGTTTTGGTCTGTGACTGACAAGTGTCATGTTCTGGTATCAGAACATTATCAAGGGTGAACATCCAGAATCCTTTAAAACTTCTTGTTTGCAAACACACTTGACATTTCAGCTATGTTATTTTTGCTTATAGAAATAATGCTGGTTATAACGGGGTATGAGACACAGCATGCAAGGATTGCCCGATCTATCAGCATCCCCATATGTCTTTAAAGATGAAAATAAACACAGATGGCATTGACTTCATGTGATTTTGCTATAAGGCCTGAGTAACAACCTTGGAGCCTGCCCCTCTGTTGATAATAGCAAGCTATAGAATGCTGTATTTTTAGCACATTCTTGCAGTAGAATATCTGTGGCAGAAAACACACCGACATTTATGGGAGTGTACGAAAAAAACAGTGGGACTGCCTATATGGATGTGAATGGAAGACCGCCCTATGCTCACCAATGTACAGAAATCTCCACAAATTTATTGTGTACAATAGTCCTAAGAATTTGCACTGTGATTTGCATTATTCCTTCTCTTAAGCACTCCCTTTCGGGGCTTATCACTGCTGTAAGCAACTGCCATAGACTTTAAATTAACTCTGGAAAATAAGAGTAGCTTAAACCTTTTTCAGTGAAAGAACACTTGGAATTTTCCAGACTTTTGGAGTAATCACGCTTCCTGAAGTAGCTCATTCTTTATACCATTTATTGTCCATCCCTCTTTCCAACTGTTGGTTATCGTTGCAGTTTTATCTTATAAATTTCAGATGATAGAGAGGGTGGCTCTTGGAACTAAGTCCTAAAAGCCAGATTGTTGGCAAGTCCAAAGCAAGTGCACAAAAAAAGAAGAGAGGGGGGGATAACACAGGTGAATGCCCATGGTGGAAGGCCTTTCTCAAGGTGCTGAACATCCTGCTCTTGTGAATGCCATCAGCACCTAAAAAGGATGTTAGAGAGATGAATGGGATACGGAAGAAGGCTAGAAAGGGAGAACCCACTCTATATGAATGGGTGTGAGATGAGTTTCATTACAGATAGTTCCCCCGATAGTCACATGTTTCCTGGGAAGTCCCAGAGAAGGTTGGATCCGGTAGGTGTGAGGCCTGTCACATCACCCAGCCCTCAGGAGCAATGCATGACATTATCTATGGGATTTAAAATGATGATGCGATATTTTCTGAACTGGTATAATTTTCAAATGTGTTCCCTGTGTGTGTGTGTGTGTGTATTTGTGCGTGTGTTATAAAAGTTAAATTTTAAGACAAGTTTTGCTGCTGGAATATATATAAAACTTAATTGTTTTATATAACCTCTCTGCTTTCTTAACCACTTGGCTCCCCTAATGACAAGTGTGGGGCTTCACTTAGCATGGCTCATTTCCAGATTTTTGCACTTCACGTGTTTTCCATCAGTTTGATTGCTTCGTCACCTCTCCTTCTTGTTTGGTGAATGATCTCAAGAACAACAGATCTTTTCTCTCCTCTCACTGCTGTTCGTTAGCATTTTTATGGCCGCTAGCCTAGGAACTGTGTGTATTTTCCAGGGGTTGTTCTCCGTAAGGTCATTCATAGTTACACTGCTGCTGGGACAGCTGTAAGCAGGAGTATAGGAAGCATATTTGACTTAGTATCAAATATGTGCGTGTGTGTGTGGTACCAGTCTCCCTGCCTCCTCACCTTCACCAGCTTGCTTTATGCTCTGTGTCGAAAGCACACTGGTTTGTTGTTTGTTTGGTTTTTTTCCTGGTCTTCTCAGGAAGGCTAAAGCCATTCAGCACCAAGACCCAGCGGCCTTTTTGCTGCCGAGTTTGCACACTTTCAGATGTTTAGATTGGGAGTTGTCCCACTAGTCTTTTGTTTTGGTCAGAAACACCTCCCTGCTTCATGCCTTGCGTTAAAAGTGCGTAGGTTAACATTGAGCATCAATTTGACGAAGCCCCTGCAGAGTAGTGTTGGATACTTCCATTTCAGCTTTTTTGGTGAGCGTTGATCTGCTCAGCGTTAAGCTGTCCGAATCATGCAGCGAGCTCTAAAATTGCAAAACAATGTGACATTTAATCTAAGATGTTTCTGTAAACAAAAACCTGTTGCTGCAGATTTATGTACACAGAAACACGCCAAAAGTCATATGCTCGGGTAGGAACTTAATATGAACCTAATCACATCTTTAGCATTAAAGCAAAACTATGAATGACCTTAAACTTTCATTTAACTAACTTATCTGTGGTTATGCTTGAATCTCACTTTGAATGTTAACTCTAAACAGCTAACCTGTTTCTTCCCTTTATCCACTTTTTTCACCTATCATTGCATGACACGCAG
Seq C2 exon
GGTCAGTTTTGTGCATGACACCCGCTACCAGTATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016890:ENSGALT00000042993:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (disopred):
  C1=NA A=NA C2=NA
Domain overlap (PFAM):

C1:
NO
A:
NA
C2:
NO


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
ALTERNATIVE
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Annotated function
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]