GgaEX0025050 @ galGal4
Exon Skipping
Gene
ENSGALG00000016890 | MBNL2
Description
muscleblind-like 2 isoform 5 [Source:RefSeq peptide;Acc:NP_001156846]
Coordinates
chr1:144576579-144597544:-
Coord C1 exon
chr1:144597391-144597544
Coord A exon
chr1:144592762-144592856
Coord C2 exon
chr1:144576579-144579554
Length
95 bp
Sequences
Splice sites
3' ss Seq
CATGGTTCCCCTCCTGAAAGTAC
3' ss Score
3.97
5' ss Seq
CAGGTTTGC
5' ss Score
4.86
Exon sequences
Seq C1 exon
GCCTTTCCTCCCGGTGTTCTTCACCCTTTACCAAAGAGACAAGCACTTGAAAAAAGCAATGGTGCCAGTGCCGTTTTCAATCCCAGTGTCTTGCACTATCAACAGGCTCTTGCCAATGCTCAGTTGCAGCAACATGCAGCGTTCATCCCGACAG
Seq A exon
TACCCATGATGCACAACGCTACGGCCGCCACTGTCTCTGCAGCAACAACTCCTGCAACAAGTGTTCCCTTCGCCGCAACAGCCACAGCAAATCAG
Seq C2 exon
ATAATCCTGAAGTAATCAGCAGGAACGGGACGGAGTGCCACGAAGCCTCCCTGCGGATGGCCAAGCACGGCTACTGTACATACTATCCTGTCTCCTCCTCTCTAGAATTGCCACAAACTGCATGCTAAGTAAAGAATTTGTTCTTACGGACAAATCACAAACTCTAAAAAGCTAGTGCTGCTATGTCATATATGAATATTAAATATGGTATGCTTACTATACTCCGACCTAAAATAGTTAACTACCTGATACCAGCTGTGATGTTTCAAGACATAAAGGGTAACATTTAGTTTCGAAGATTTTCTAAACATAGTTTAATTCTTGCAAACGTTGTCTTTTCTCCATAACTATACCTAATGGAAATGGTCCAATTGAGTTAGCCTTGGGAGATTCGCTGTTCATGAATCTTTCAAGCTCAGCAATAATTAATTTGTATTGGCTAAAAACATATCCCGGTTGCACGTTTAGTTTTAACCCGAACTATAATTGGGGGTTTTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016890_MULTIEX1-2/3=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCAGTGCCGTTTTCAATC
R:
ATGTACAGTAGCCGTGCTTGG
Band lengths:
174-269
Annotated function
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]