HsaINT0107623 @ hg19
Intron Retention
Gene
ENSG00000105357 | MYH14
Description
myosin, heavy chain 14, non-muscle [Source:HGNC Symbol;Acc:23212]
Coordinates
chr19:50758477-50760743:+
Coord C1 exon
chr19:50758477-50758575
Coord A exon
chr19:50758576-50760555
Coord C2 exon
chr19:50760556-50760743
Length
1980 bp
Sequences
Splice sites
5' ss Seq
GGGGTGGGT
5' ss Score
3.34
3' ss Seq
TCTGCATCTCCATCTGACAGTGG
3' ss Score
5.78
Exon sequences
Seq C1 exon
AACATGGGGGCTTCCAGCAGTTCTCTTTCCTTGGCTCCTTCCCACCGTCGCCCCCAGGATCTGCAGAGAGGTGCAGCTCTGCTATTTCTCCGCCAGGGG
Seq A exon
GTGGGTGTCTCTGTGCATCGATGGGTGAGGCTTGCTGGAGGAGGAGGGTGGACCTGTTGGGCTGGGGACCTGGTTTTGAACATCTGTCCCCTCTCCTCTTACTGTGGAGGTCTCTCACTCTTCCTTTCCCTCCTTGTTGGCTCCCTTGGAAGTTTCCAGACTCTGTAGCAGCAGAACCCCTTCTTCTAACTAAACTGCATGTAAAAGTACAAACAAGCGTGATAGTACCAGCTCGCGTTTCTTGAGCACTTACTATGTGCCGTTCACCATGTGAAACCCCTTTAGAATTATCAACACCCCATTACACAAATGAGGAAACTAAAGCACAGAGAAGTTAAGTAACTTGCTGAGGTCACACAGCCAGTAAGTGGCAGAGCTGGGATTTGAACCCAGGACATCAGATTCCAGAACTTTAGTTCTTATCTGTGCTATGAGGACTTAATAAATGATAATTATCATTTTGAAAATGACAGGGAGTACGGGGTAGGGGAGACGGTTGAACCTGGGGAAGAAAATAACATATTTGAGCCCCTGCCATGACCTGGCCCTGCCCTAAGCACAGATTATCTAGTTGACGGTTGATGGCGCTTGAATGGGATGAGTTTTGCAGGACATCAGATTCTGCCCTAGCTGTGGGTTCCTGAGGAACCTGGCATGATTCAACACATAGAATTTGGGACCAGGTGCATTGGCTCACCCCTATAATCCCAGCGCTTTGGGAGGCCGAGGTGAGAGGATCACTTGAGGACAAGAGTTTGAGATTAGCCTGAGCAACACAGGAAGACCCCGTCTCTACAAAATAAATTTAAAAATTGGTGGGCATGGTGGTGTGCGCCTGTAGTCCAAACTACTTGGGAGGCTGAGGTAGGAAGATCACTTGAGCCTAGGAGGTTGAGGCTGCAGTGAGCTGTGATCACTCCACTGTACTCCAGCCTGGGTGACAGTGAGACTGTGTCTCAGAAAACAAACAAACAACAGAATTCGAGACAGTGCCAATAGAAGGAATGGATATTTTTCACTACCCAAAGCAGCACCGCCAAGCGGCACTAGAGAAAATAGAATCTTTTTGTTGAGACAGAGTCTAGCTCTGTTGCTCAGGCTGGAGTGCAGTGACACAATCTTGGCTCACGGCAACCTCTGCCTCCCAGGTTCAAGTAATTCTCCTGCCTCAGCCTTCCAAGTAGCTGGGATTACAGGCATGTGCCACCACACCTGGCTTAATTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGCCTCGAACTCCTGACCTTAGGTGATCCACCCGCCTTGGCCTCCCAAAGTGCTGAGATTACAGGCATGAGCCACCGCACCCTGCCAAGAAAATAGAACCTCTATGAAATTAGGCTCTTCTGGAAAAATGGTTAAAATAGAGACAGTTTGCCCTATTTCAAATATTGCATATAATGCAAGAATTTATTACATCTTTTAATATGTTTCAGATTCCTAAAATGCAACTGCAGTGGTTATGTTATCACTGTTTTCTCTCTCTATGCCTCAGTTTCCAAATCTGTAAAATGGGAATGATTCTTACAGGCTTATAAAGCCATTGATGTAAATTGCTTTGAGCAATGCCTGCCAGAGTATCTATGCTAGGTAAGCATTTGCTGTTATTGTCATCATTTATTGATAAGGAAAACAGAGATCATGTCCTTGAAGAGAAGAAGGGTCAAAGACCAGAGTTTGAGAGGACTCCTACTGTCTGAGTTCTAATCTCGGATCTTCAGTTTCTAAGCTGTGTGACCTTAAGCACATTCTCCCACTCTTCAGAGCCTCAGTATGTCCATCTGTCCAATGAAGCTGATATCTACCTTACAGGCTGTGTGAGGTCCTTCATATGTAAAGTGCCAGTTGTGATAAATGATAAGACCCTTGACCTTTGGCCCAGGTCCCTAAAACTGACCCTGACCTCCTTCTCTCTCTCTCTGCATCTCCATCTGACAG
Seq C2 exon
TGGAGGGCATCGTGGGGCTGGAACAGGTGAGCAGCCTGGGCGACGGCCCACCAGGTGGCCGCCCCCGTCGGGGTATGTTCCGGACAGTGGGACAGCTCTACAAGGAGTCCCTGAGCCGCCTCATGGCCACACTCAGCAACACCAACCCCAGTTTTGTCCGCTGCATTGTCCCCAACCACGAGAAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105357-MYH14:NM_001145809:17
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.265 A=NA C2=0.270
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.6=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(8.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACATGGGGGCTTCCAGC
R:
CTCTTCTCGTGGTTGGGGACA
Band lengths:
286-2266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)