HsaINT0108824 @ hg19
Intron Retention
Gene
ENSG00000167306 | MYO5B
Description
myosin VB [Source:HGNC Symbol;Acc:7603]
Coordinates
chr18:47361714-47363255:-
Coord C1 exon
chr18:47363081-47363255
Coord A exon
chr18:47361795-47363080
Coord C2 exon
chr18:47361714-47361794
Length
1286 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
TCCGTTTTTATCCCCAACAGATT
3' ss Score
9.64
Exon sequences
Seq C1 exon
GTACAATATAAGTCAGCTTGAGGAGTGGCTTCGGGGAAGAAACCTTCACCAGAGTGGAGCAGTTCAGACCATGGAACCTCTGATCCAAGCAGCCCAGCTCCTGCAATTAAAGAAGAAAACCCAGGAGGACGCAGAGGCTATCTGCTCCCTGTGTACCTCCCTCAGCACCCAGCAG
Seq A exon
GTACAGTCACTTTGCACCTCTGTCAACATGGTATTCCAAGGAAGCCCTGAGTCCATTCCAAGTCTGTTCTCGTTGGTGGTTATTTGTTAGTGTTGCACTCCCACCCTTTATATACCCCTAATGAGACAATTTTGAAGTGCAGCTGATGGGATATTCCTAGATGAACCAAAAACCATTTGGTCTGTGAAACAAGATGCCACAGATACTGTTTTCTAGTAACTCTCTATCCCTCTTACTCACTTAAAAAGATAAGGTAGCAAACTCACAAAACGTTAAGTTTAGGTAAAAACTTCTTTAAATATAATGAATTCTGGAATGTTTCTTACATAGAAATCCACAAATTTTCAGAAATTGGCAGCATCAGGTATTTGCTTTCTTTACAAATATAACTGTAAGAAAAACCTTTTCTTTAAAACTAATTGCAATATGGTCATATTTTCACTCACACTCATTTATATTGTTTTAAATGAAGTCATTAAGAACTTAGGGGCATTTAAGTGTTACTTTCCTTTTCCCTAAAAAATGTATAACCATGATTCAGTTGCCGACACATTGCCAGTCCCTGAAAGATAAATAACAAAATCCAAACTCAGTACAGAAAAACACATCTTAATATAGCAAAGTGAACACCTTTCCTTACCTCCTCTGCTTACTATTAAAATATTAAATATCTAACTCTTTAAAAAACTGCTTCCTTCTGTAAACATTTCCAGAAAGTCTTCAAACATTTTTCTTCTCTTTAAATACATTTCACTTAAAGTAAGTTTCCTTCTAGATGCAGCTGGCATTGCATTTGGGCAGTCTACTTCCACCAAACCAGTGGTAGGCAGACAAAAGAGTATCTCCTGTTCAAATACTCATTTGTAAACAATGTTGGGGGACAGGGGGTAGTTAGGTATTAAACAAGACCTTTCTCATCTAAGGTAAGATCTCCAGTACTCTTCAGAAGAAACCTTTAAATTACTAGTAGATATGAGGCTGAGGATTTCAGGCAACTGCATTCTAAACTCCTCATTGTGTATACCAATGAGCATAGTGGGGAGGGGCAGGTGGGTTTACAGGAGACATGAGTTCGGTGAGAGGGCTCAGATCCACCTGACAAAGCTGTGGGCTCTAGTTTCCTGGATGCAGGCTCCAAGTGTAAATGTCAGTCCAGCTCCATCTGTGTTGTGGGCCTTGTCTAAAGAGGATCATACTCTTGTACCAATGTCACATATTCTTTAAAGTTCAAAAGTTGTCTCATGTTCATTTAGCTCTGTGCTAAATTCCGTTTTTATCCCCAACAG
Seq C2 exon
ATTGTCAAAATTTTAAACCTTTATACTCCCCTGAATGAATTTGAAGAACGGGTAACAGTGGCCTTTATACGAACAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167306-MYO5B:NM_001080467:38
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0184314=DIL=FE(54.7=100)
A:
NA
C2:
PF0184314=DIL=PD(12.3=48.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATATAAGTCAGCTTGAGGAGTGG
R:
CTGGATTGTTCGTATAAAGGCCAC
Band lengths:
254-1540
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)