RnoINT0097284 @ rn6
Intron Retention
Gene
ENSRNOG00000014104 | Myo5b
Description
myosin Vb [Source:RGD Symbol;Acc:621347]
Coordinates
chr18:70718668-70720311:+
Coord C1 exon
chr18:70718668-70718842
Coord A exon
chr18:70718843-70720230
Coord C2 exon
chr18:70720231-70720311
Length
1388 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
CACTGCTTTCATTCCAACAGATT
3' ss Score
9.59
Exon sequences
Seq C1 exon
GTACAACATAAGTCAACTCGAAGAGTGGCTTCGGGGAAAAAACCTTCAGCAGAGTGGAGCGGTTCAGACCATGGAGCCCTTGATCCAGGCAGCCCAACTCCTTCAGCTGAAGAAGAAGACCCAGGAGGATGCTGAGGCCATCTGCTCTCTGTGTACCTCCCTCAGCACCCAGCAG
Seq A exon
GTACAGCAGTTCAAGGCCAGCTCTGGCCTTTCTGGTCTATTCTCACTAGGAATCTTCTAAGGGTGTGCTTCCAGCCCCGTTGACACAGTTTTTTCAGGTTTGCAGCCAGTAAGATGAACCAGAGATCGCTTTGGTTGTAAAACCCAATGCCAGTTCCCCGTAACTTTCTGATCGTTCTTTTGTGCTAAGTTACAAGACCCACAAACCTTGATAACTTTTTTGATAATTACGTGTGCATGTTCACATGCGCTATGGTGTGTGTGTGTGTGTGTGTGTTAGGTAGGTAGGTCAGAGGTTGACTGGGAGGAGACGGTTCTCTCTTCCACCATTTGGACTCTGGGGATTGACTTCAGATAACCAGGCATGGCTAAAGCAGTCCTCACCCAATGAGCTGTCTTGCGATGGGAGCCCTCCTGTCATAATTTTAAAAAAAACAATTCCAGATAGTTTCTTACCTAGAATTTTTCCCCTGAATCTGACAACATGAAGCCGTTTGCTTTCTTTATACATTTTCTTTACACCTGTAATTTTTATATGGCCATATTTTAAGATTCCGCTTATATCATTTTTAAATGAAGCCTTAGCAATCTAAAGGTACTTAAATATTTTAAATTCCTCTCCCCAAAATTATATTTATACACTATAATTTGGTTGTAGACATATGACTATAGTCTACAAAGAGATAAAAGTCCTAGATCTTGCCTTTGGTCACGGCTTCCTAGAAATGGGCCACAGACACTGCAAGATGGAAACTAGAATCTCCCAGTCAAATGAATATTCTTCCCAACGAATACCTTTGCAACCAACCAAACTCGGTAATGTGAAGGCTCATGTTTCTCTCCCCTGCTGGCTTCTGAAAGCCTGCACATTCTTAGTTTCCCAGCTCCCCTCCCCCAGTAACTGTCTCTCTTCTGTGAGCTTACGTATTGCCTGCACCTGGCTGTGCACGCAGTAGGGTACGCCCACCAAAACAGTTGATGGGCACACAAGACTGTGTCTGGTTAAGAAGAGAAATCTCACTTGTAAATGAATTGACTTAAGGAAGAGGTTGAAACAGGGTGGTTAAGTAAGCCCTCTCTCATACCAGATCCCTGGCTCTCTCCTGAAGAAGTTTAAGTTACTGACAAAAAAGAGTCTGGGAGCTTTCTGAACTCGTGTATAAGCCACCAAGCATAGAGGAGGGGTGGGCATCAAGGACATGAGTGTCATATAGGAGCTCAAGTCTCACAGGGTCATGGTTGGAAACGCACCAAAAATGGCACTTGATCCTGACCAAGCACCTCGAGGGGTTTGTCCAGAGAGTTAAACACTTTGTGACACCACTGTCAGAGTCTTAAAAGTCTTCAGTTTGTCAAGTTCTGTACTGAACACTGCTTTCATTCCAACAG
Seq C2 exon
ATTGTCAAAATTTTAAACCTCTACACTCCCTTGAATGAATTTGAAGAACGGGTGACAGTGTCCTTTATACGAACAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014104:ENSRNOT00000019512:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0184314=DIL=FE(54.7=100)
A:
NA
C2:
PF0184314=DIL=PD(12.3=48.1)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAGTGGCTTCGGGGAAAA
R:
TGTTCGTATAAAGGACACTGTCACC
Band lengths:
231-1619
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]