HsaINT0115625 @ hg38
Intron Retention
Gene
ENSG00000160113 | NR2F6
Description
nuclear receptor subfamily 2 group F member 6 [Source:HGNC Symbol;Acc:HGNC:7977]
Coordinates
chr19:17231883-17236065:-
Coord C1 exon
chr19:17235499-17236065
Coord A exon
chr19:17232627-17235498
Coord C2 exon
chr19:17231883-17232626
Length
2872 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
3' ss Seq
ACTTGCCTTTGTCCCCCTAGACG
3' ss Score
11.59
Exon sequences
Seq C1 exon
CGGTGCAGCGCGGCCGCATCCCGCACTCGCTGCCTGGTGCCGTGGCCGCCTCCTCGGGCAGCCCCCCGGGCTCGGCGCTGGCGGCAGTGGCGAGCGGCGGAGACCTCTTCCCGGGGCAGCCGGTGTCCGAACTGATCGCGCAGCTGCTGCGCGCTGAGCCCTACCCTGCGGCGGCCGGACGCTTCGGCGCAGGGGGCGGCGCGGCGGGCGCGGTGCTGGGCATCGACAACGTGTGCGAGCTGGCGGCGCGGCTGCTCTTCAGCACCGTGGAGTGGGCGCGCCACGCGCCCTTCTTCCCCGAGCTGCCGGTGGCCGACCAGGTGGCGCTGCTGCGCCTGAGCTGGAGCGAGCTCTTCGTGCTGAACGCGGCGCAGGCGGCGCTGCCCCTGCACACGGCGCCGCTACTGGCCGCCGCCGGCCTCCACGCCGCGCCTATGGCCGCCGAGCGCGCCGTGGCTTTCATGGACCAGGTGCGCGCCTTCCAGGAGCAGGTGGACAAGCTGGGCCGCCTGCAGGTCGACTCGGCCGAGTATGGCTGCCTCAAGGCCATCGCGCTCTTCACGCCCG
Seq A exon
GTGAGCCACGCTCCGAAGAGGGCCGCGGGATGGGGGGACCCAAGGGAGGTTAGGAGGAGGGCGGCCTGGACCCAGACTCCGGCCCCCATAGCGCCCCGCTCGCTCCCTAGGCCTGGGGCCCTGCACGCGCCGTGAGTGAACGCTCTTGGGTGGCTGTAGAGGGGTGATGTAAGCAGTGTGACACTGTGACACCCCCACTCCGTGATCCCAGGACTCTCGGAGAACTCTGAACCCCGGACCCCAGACCCAAGGCTGGGCCAGGACCAGGGCCCAGACCCCAGAACCCTCTTCCTGTTCCCAGGCTCCCTGAGACCCCTACTCCCTCACCAAAGGGCTCTTCAGGCTTAGTGAGCACTGATAGCACAAGGTTGGGGGGACGTGGGAGGGAAGGTCCTGACCCCCTGGTTCTGGCCCCCTCAGGCCCCCACTGGGCTCCCAGGGCAACCTCCAGGTAGCCAGGGTTGTAGGGATCTGGGTAGGGGCGTGGCTCGGAGGCCCCTCCCGTTGAGGGGCGGGGCAACCCCAGAACTTTCTTAACCATCAGCTATCTAGCAGTGGTAGCCCATCGTATTCCAGCGACTGGCGGTACAGCCAAATTTTTTTTTTCCACTTTATTTTTTTATTTGTATTTCCATTTTTTGAGACTGGGTCTCACCCTGTCACCCAGGCTGGAGTGCAGTTGTCCGAACACGGTTCACTGCAGCCTTGATCTCCAGGGCTCAAGCAATCCTCCCTCACACTTCAGCCTCTTGAGTAGCTGGGACCACAGGCGTGCACCACCATTCCCGGCTAATTTTTTTTTAAACGTTTTCTGTAGAGACGTGGTCTCACCGTGTTGCCTAGGCTGGTCTTGAGCTTCTGGGCGCAACCAGTCCTGCCTCAGCCACCCAAAGTGCTAGGATTACAGGCATAAGCCACCATGCCTTTAGACAAAGATCTCTCCAGCCTGTCTCCTGGGAGTTCTTTAACCTACTGGAAGTCTCTAGATCCCATCAGAGGTATCTTTGGGGCTAGGAACCAGATCCAGGCTACTCTGGGAGGTGGCTTTCATTTGATAAATATGGTTTTGGGCCTGCAAGGTGGCTCAGGCCTGTAATCACCGCACTTTAGGAAGCAGAGTTGGGAGAACCACTTGAGCCCAGGAGTTCGAGGCTCCAGTGAGCTCTGATTTTCCCACTGCACTTGAGCCTGCGCAACAGAGTGAGACCGCGTCTCAAAAATCAATAAATATGGCTTTATTTATTGTTTTCCCAGAAGATTTTTTTTTTTTTTTTTTGAGACGGAGTCTTACTCCGTCGCCCAGGCTGGAGTGCAGTAGCACGATCTCGGCTCACTGCAACCTCCGCCTCCCTGGTTCAAGCTATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACGCGTCACCACGCCTGGCTAATTTTTGTGTTTTTAGTAGAGACGGGGTTTCATCATGTTGGTCAGGCTGATCTCGAACTCCTGACCTCATGATCTGCCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCTGGCCTTCCCAGATTTCTTCTTGGCTTCCTATCTTGGGTCTCTCTCTAGAGGCTGCCACATTCTCTCACACCGTAGGCCCTTCTGGGCTCTGTCTTCCTCATCAAATTCCCTTCCCAGCCCCACCTTCCCTGCGAGCTTCCTTAGAACCCATCTCCTTGGCCTGGCTGGTGGCCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGGAGATTGCTTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACACAGCAAAACCCGTCTCTACTAAAAATACAAAAATTAGCTAGGCGTGGTGGAGTGTGCCTGTAATGCCAGCTACTTGTGAGGCTGCGGCAGGAGAATCACTTGAACCCGGAGGCAGAGGTTGCAGTGAGATCGTGCCACTACACTTCAGCCTGGGCGACAGTGTGAGACTCTATCTTAAAGAAAAAAAAATTAGAACCTGTCTCCCTGCCAAAGGCATGAGTTGGGTGCCAGCCACCCTTGAAACATCACTGCCTGCACCCCTATGTCACTGGTTAGATGAGAACACCTCACTATCTCTGGAGGATCGACACAGTCTTAGATAGTCCCATTTGCATCCCAGGGTCGTTTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTGAGACAGGGTCTTATTACTCTGTCGCCCAGGCTGTGCTATGATCATGGATCACTGTAGCCTCAAACTCCTAGGCTCAAGAGATCCTCCCACCTCAGCCTCTTGAGGAGCTGGGACTACAAGCGTGTGCCATCACACTGGACTAATTTTTATTTTTTATTTATTTTGAGACAGGGTCTCCCTCTGTTGCCCAGGCTGGAGTGCAGTGGCACGATCTCGGCTCACTGCAACCTCCGCCTCCCAGGCTCAAGCGATCCTCCCATTAGCCTTCCGAGTAGCTGGAACTGCAGGCACGCACTACCATGCCTGGCTAATTATTCTTATTTTTAGTAGAGACGGAATATCATCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCCACCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCTACTGTGCCCAGCCCCAGCTGATTTGTTTTTGCAGAGAAGGGATCATACTATGTTGCCCTGGCTGGTCTCAAATCCTGGCCTTAAATGATGCTTCTGCCTTGGCCTCCCAAAGTGCTGGGACTGTGGCCGTGAGCCATCATGCCCGGCCCCCTGTTCTTACCCACAGTGGCGAGTGGTGTCCCCTAGTCACCCCTGTGGGCTCTGTGTTCTCTAGCTGCCTCCCACCTGTCTGACTTGCCTTTGTCCCCCTAG
Seq C2 exon
ACGCCTGTGGCCTCTCAGACCCGGCCCACGTTGAGAGCCTGCAGGAGAAGGCGCAGGTGGCCCTCACCGAGTATGTGCGGGCGCAGTACCCGTCCCAGCCCCAGCGCTTCGGGCGCCTGCTGCTGCGGCTCCCCGCCCTGCGCGCGGTCCCTGCCTCCCTCATCTCCCAGCTGTTCTTCATGCGCCTGGTGGGGAAGACGCCCATTGAGACACTGATCAGAGACATGCTGCTGTCGGGGAGTACCTTCAACTGGCCCTACGGCTCGGGCCAGTGACCATGACGGGGCCACGTGTGCTGTGGCCAGGCCTGCAGACAGACCTCAAGGGACAGGGAATGCTGAGGCCTCGAGGGGCCTCCCGGGGCCCAGGACTCTGGCTTCTCTCCTCAGACTTCTATTTTTTAAAGACTGTGAAATGTTTGTCTTTTCTGTTTTTTAAATGATCATGAAACCAAAAAGAGACTGATCATCCAGGCCTCAGCCTCATCCTCCCCAGGACCCCTGTCCAGGATGGAGGGTCCAATCCTAGGACAGCCTTGTTCCTCAGCACCCCTAGCATGAACTTGTGGGATGGTGGGGTTGGCTTCCCTGGCATGATGGACAAAGGCCTGGCGTCGGCCAGAGGGGCTGCTCCAGTGGGCAGGGGTAGCTAGCGTGTGCCAGGCAGATCCTCTGGACACGTAACCTATGTCAGACACTACATGATGACTCAAGGCCAATAATAAAGACATTTCCTACCTGCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160113:ENST00000291442:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=PU(65.0=62.6)
A:
NA
C2:
PF0010425=Hormone_recep=PD(34.4=68.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development