BtaINT0103589 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011136 | NR2F6
Description
nuclear receptor subfamily 2, group F, member 6 [Source:HGNC Symbol;Acc:HGNC:7977]
Coordinates
chr7:5789357-5792042:+
Coord C1 exon
chr7:5789357-5789941
Coord A exon
chr7:5789942-5791448
Coord C2 exon
chr7:5791449-5792042
Length
1507 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
3' ss Seq
ACCTTGCCCTTGTCCCTTAGATG
3' ss Score
9.85
Exon sequences
Seq C1 exon
CGGTGCAGCGCGGCCGAATTCCGCACTCGCTACCGGGCACTGTGGCAGCCTCCTCGGGCAGCCCTCCTGGCTCTGCGCTGGCCGTGGCCGGCGGAGACCTCTTCCCGGGGCAGCCGGTGTCGGAGCTGATCGCGCAGCTGCTGCGTGCCGAGCCCTATCCCGCGGCGGCCGGGCGCTTCGGTGCAGGAGCCGCGGGCGCTTTCGGAGCCGGGAGCGGCGCGGCGGGCGCGGTGCTGGGCATCGACAATGTGTGTGAGCTGGCGGCGCGGCTGCTCTTCAGCACCGTGGAGTGGGCGCGCCACGCGCCCTTCTTCCCCGAGCTGCCGGTGGCCGACCAGGTGGCGCTGCTGCGCCTCAGCTGGAGCGAGCTCTTCGTGCTGAACGCGGCGCAGGCAGCGCTGCCCCTGCACACGGCGCCGCTGCTGGCCGCCGCCGGCCTGCATGCCGCGCCCATGGCCGCCGAGCGTGCCGTGGCCTTCATGGACCAGGTGCGCGCCTTCCAGGAACAGGTGGACAAACTGGGCCGTTTGCAGGTTGACTCCGCGGAGTATGGCTGCCTCAAGGCCATCGCGCTCTTCACACCTG
Seq A exon
GTGAGACACCCTGGAATTGGGGGGCTCTGGCCTGGGGAGGGGCTGGGTGGCGGAGGGGAGAGACCTAGCTCCTGACCTTGACCCCCTTAGTCCTCCACTTCCGGATCTACAGCTAGCCAGACTTGCGTCCCTGCATGCGCCTTTAGCGCTGTTGGGGGACAGTGGAGGAAGCGATGCAGGCGGTCTGACACCGTCTGTGATGGCCCCACTCCCTGATCCCAGGCCTTCATAAGAACTTTGATCCCCCACGGCTCCATGTCTTAAGGCCCCACAGCCTCCCCCCTTGATTCTCAGGCTCCCTGAGACCCCCCCCCTTCACCCCCTCATCAAGGTGTTCATCGTGCTCAGTGGGCACTGACGTGCTCAGTGGGCACTGACGGCAGAATGACAGGTGGGGGGCCGCGGGAGGGGAGGTCTGCCCACTTGGCTCTGTCCGTCACTTACTGATTTCCGTTCTCCCTGAACTCTGTGACCCTCATCTGCCAAATCAGGATGCTCCTCTTGTTACTGACCACTTAATGGAGGACTGCCTTCCACTTACGAAAGGCAGGGGTTCTCTGACACCTGGTTCTGGGGTCTCCTGGGCCCTTCGCTCCCTGATTCCTAGGACCCTAGACCACTGACCCAGGGCTCCCAACCTGCCCCCCCACCCCCGGAAGGCCTTCAGGGGCCACCCACAGCAGAGCTGGATCGGGTAGGGTGTGTGGCTTGAAGCCCCTCCCACCTAGGGGCGGAGGCATCTTAGTTCCTTCCTAGTCTTCAGTAACCGCCAAAGCCCTGCTTCATTGTGGTGGGAGTGGTGGCATAGCAGACTCTGCATTTTGCAAGGAGGTCCCACTAGGTGTCTCCTGGAACTAAGGATGCGGAGCCAGACCCAGGCTACTCTGGGAGGTGGCTTTTATCCAATAATACGGCTTTGCCCCTCTTTACTTACCCAGGACATTTTCTCTGCCCTGACATTCATAGGGCTCTCACCTGTCACCTTCACTCACAAGGGAGGTCTGTTTAGTATGTCTGAATACCCTCTCTAGGCTTTGCTTTTCTTCCCAAGTCCCCTTGCCAGCCCCCTCTTCCCCTTGAGCTTTTTGTTTGGGGTGTTTTCAGCCTCACCTCCTGGCATGCAGAATTTCCCTAACCAGAGACTGAAGGCAGCCCCTGCAGTGGAAGTGCAGTCTTAACCACTAGACCACCAGGGAATTCCTTCCTCCTCAAGCTTGATTAGAACCTGTCTCCCTGTTAAATGCCTTAGTCAGGGCCCTTCCACCCTTGAGACATCACGACCTGCACTCCGTGTCATCATCCTCAGATGAGGCCACCTTAATATCTCTTGGGGACCAACAGTGCCTTAGATATTAGACACCCCATTTGTGCGCTGGGTCCTGTCTCCCCTCCCTTGAGTGCCCTCCTCTGTACCAACAGCCCTGAGTGGTGTCCCCTAGCCCCGGTCAGCCCTGGGGTCCTGTGTCCTCCTGCCACTTCTTCTTCTGACCTTGCCCTTGTCCCTTAG
Seq C2 exon
ATGCCTGCGGCCTCTCAGACCCAGCGCATGTGGAGAGCCTGCAGGAGAAGGCGCAGGTGGCCCTCACCGAGTATGTGCGGGCCCAGTACCCATCGCAGCCCCAGCGCTTTGGGCGCCTGCTGCTGCGGCTCCCTGCCTTGCGTGCCGTCCCGGCCTCCCTCATCTCCCAGCTGTTCTTCATGCGCCTGGTGGGCAAGACGCCCATCGAGACGCTGATCCGAGACATGCTGCTGTCAGGAAGTACCTTCAACTGGCCCTACGGCTCAGGCCAGTGACCAGACAGGGCCAGGTCTGCAGACCTCAAGGGACACGGATGCTCAGGCCTCCGGGGCGGGGGAGGGTGCTCCCCCGGACAGAGGACCCTGGCTTCCCTCCTCAGACTCCTATTTTTTAAAGACTGTGAAATGTTTGTCTTTTCTGTTTTCTAAATGATCATGAAACCAAAAAGAGACTGATTTGTCTAGACTCCAGTCAAGTCTTCCCCAGAAACCCTGATGAAAATGAGGGGTGAGACAGAGGGTCCAATCCCAGGACAGCCTTGTCCCTTGGTACCCCAAGAATAAACTCGTGGGGGTGTGGCTTCTCTGGTGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011136:ENSBTAT00000014791:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.046 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=PU(65.0=60.7)
A:
NA
C2:
PF0010425=Hormone_recep=PD(34.4=68.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACAGGTGGACAAACTGGG
R:
CGTAGGGCCAGTTGAAGGTAC
Band lengths:
344-1851
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]