RnoINT0102979 @ rn6
Intron Retention
Gene
ENSRNOG00000016892 | Nr2f6
Description
nuclear receptor subfamily 2, group F, member 6 [Source:RGD Symbol;Acc:621685]
Coordinates
chr16:19769968-19772218:-
Coord C1 exon
chr16:19771694-19772218
Coord A exon
chr16:19770607-19771693
Coord C2 exon
chr16:19769968-19770606
Length
1087 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
GTCATCCCTATTTCCTGCAGATG
3' ss Score
10.39
Exon sequences
Seq C1 exon
CGGTGCAGCGCGGCCGCATCCCGCACGCTCTCCCGGGTCCCGCGGCCTGCAGCCCTCCGGGCGCGGCGGGAGTCGAGCCGTTCGCGGGGCCGCCGGTGTCCGAGCTGATCGCGCAGCTGCTGCGCGCTGAGCCCTACCCCGCGGCTGGGCGCTTTGGTGGCGGCGGCGCCGTGCTGGGCATCGACAACGTGTGCGAGCTGGCGGCGCGCCTACTGTTCAGCACGGTCGAGTGGGCCCGCCACGCGCCCTTCTTCCCGGAGCTGCCGGCCGCCGACCAGGTGGCGCTGCTGCGGCTCAGCTGGAGCGAGCTGTTCGTGCTGAACGCGGCGCAGGCGGCGCTACCGCTGCACACGGCACCGCTGCTGGCTGCCGCGGGGCTGCACGCCGCGCCCATGGCTGCGGAGCGCGCGGTGGCCTTCATGGACCAGGTGCGTGCCTTCCAGGAGCAGGTGGACAAGCTGGGCCGCCTGCAGGTGGATGCTGCCGAGTACGGCTGCCTCAAGGCCATCGCGCTCTTCACGCCTG
Seq A exon
GTGAGCCGCCCCGCCCTATCAGAGCCCCCATCTATACATAGGCCACGCCCTAAGCAGCCCTTTCCTGGGGACAAACCATGCCTCTAAGTAGACTCCACTCTGCCACATACCCCGCTCCCAACTGGACTCAAGGCCACGCCTCAGCATTGATGCCAGGCAACCGGGCCATACCCTCCCCTCTCTAGCCAACTTGGGCTACTCCCCAGCCAGACTGAGAGGACATTGCCTCAGGCCACACCCTTTTGATCCCTGATGACGCCACCGCTGCACCTGGCCTGGCTTGCTGCGCTCTGGCCTAACACTACCCCCAGGCCCCTACTCAGACAAGGCCATACACCTCATCCCCAGTTCCTGACACTGCTCCAGGCCACATACCAAAGCTGCAGGAGACCATACTCTGCATCCTACTCATGATATTGCCCCATCATGCTCTCAGGCTGATCTAGACAGTACCCTACTGGACTGTGAAACACTCTGGAAGATACAACTCAGGCAAACTCTAGGCCATGCTATTAATGCTACTCTCTACTCATAGGGCAGACCTCTGAGCTCCTGCCTCTGTTCTGGGGCCATATCCCACAGGGCCACTCTGCCTCTTGTGCCATGCCACTTGGGTGAGGACACAGATAATGACCCTAAGTTTTATCCCTGGCCATACCTCAGGTACCTTTGGTGTGGTAGGGGAGGACAGTGCAACATTTTAGAAACCCTGAGGTGTGAGCTGAAGCAAGGGACCAGCGAGTTCTAGGATTGTATGGAATACAGATCCAGACCTTGTCTAATTCCCTTCTGAGAGAGCAAAAGGGGTATCTGGGCACTGCTACAGAGCGAGGCCTTTTGGTGGCCAAGGGAGAACCTGGCCTGGAGGCTATTCCCACAAAGTGGTGCATAGCGGTAATGCCCCTCCTACAGGGAGCCTGAGCCTGTTCCATGGTTTACATGGCTAGTCTGTGGTGGACACTCACTTACATACTCCCATACATGCCCTGGGGTCATCCCTCTGCTACGCCTGCCTCTGGTGGCATCCTTACCCCTCTCACCCTACTTCCCCAACCGTGACTGCCTTTGTCATCCCTATTTCCTGCAG
Seq C2 exon
ATGCCTGTGGCCTTTCTGACCCAGCCCATGTTGAGAGCCTGCAGGAGAAGGCACAGGTGGCCCTCACCGAGTATGTCCGTGCCCAGTACCCATCACAGCCCCAGCGCTTTGGACGCCTGCTGCTGCGGCTGCCGGCCCTGCGTGCTGTGCCTGCATCCCTCATCTCCCAGCTTTTCTTCATGCGCCTGGTGGGCAAGACACCCATCGAGACGCTCATCCGGGACATGCTTCTGTCAGGGAGCACCTTTAACTGGCCCTATGGCTCGGGCTAGTGATGGTCCTTTCCAGGACACATGGAAGCTGGGGCCTTGTAGGGACCATGGGGACCAGGGCCCCAGCTTCTCTTCTGAGACTGACTTCTTTTTTTAAAGACTGTGAAATGTTTGGTTTGGTTTGTTTTTTAAATAATCATGAAACCAAAAAGATTCGGATCTCCCAGGCTCCAGCTTTGTCCTGGCAGCCCTTCGGCAGGGTGGGGCTGAGGGTCTGGAGCCAGCATGCTAGTGCCTCTGGTCCTGGGTATCTGGAAGGGCCACTGCAGCTGGGCAGGGGTGCTATGGGCCAGGAGGGTCCCCTGGACACATGGCCCATGGAGGGAACCATGAAATCATGGCCAACAATAAAGATATTCCCATCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016892:ENSRNOT00000022898:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=PU(65.0=67.6)
A:
NA
C2:
PF0010425=Hormone_recep=PD(34.4=69.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACTGTTCAGCACGGTCGAG
R:
CAACATGGGCTGGGTCAGAAA
Band lengths:
349-1436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]